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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcccaatccctccctccgcttcgtcccgagcttcgaccccttccccagtcatctgacgtgcgcacgcgcttgttgttgctcgcctgggctaccgcagGTTCGGCAGCCGGTGGGAACGGATCGGGAGCCGCATGCTCGGCGCCTTCGTGCCTGAG

Basic information

species Zea mays
transcript GRMZM5G846548_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G846548_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g11500.1 (Oryza sativa), 3'ss of exon 1
gtgcccaatccctccctccgcttcgtcccgagcttcgaccccttccccagtcatctgacgtgcgcacgcgcttgttgttgctcgcctgggctaccgcagGTTCGGCAGCCGGTGGGAACGGATCGGGAGCCGCATGCTCGGCGCCTTCGTGCCTGAG
       | ||| |  ||| | ||   | ||   ||  |     ||||  ||| |   |   | | ||||   |  |  ||       |||   ||||||||||| ||||||||||  ||| ||||  ||||  ||||||||||||||||||| |||
----gtgaacccccgttcctcctccctcgga---tccgctttgcccccgctcacccatctcaccc-cgcgac-gcggcggc-------ggcgcgcgcagGTTCGGAAGCCGGTGGGGGCGGGTCGGCGGCCGGCTGCTCGGCGCCTTCGTGCCCGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccccagtcatctgacgtgcgcacgcgcttgttgttgctcgcctgggctaccgcagGTTCGGCAGCCGGTGGGAACGGATCGGGAGCCGCATGCTCGGCGCCTTCGTGCCTGAG
        atctgac  putative branch site (score: 3)