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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtgtctgcaggcttctgcgtagtttttttttttttttttttggggagggagggttcagatggaacaatgctcaaaatgcgattaatgtttttccagTGGCAGATATTTTGAGGATATGTATGCTACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCG

Basic information

species Zea mays
transcript GRMZM5G843914_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241582|gb|DT649496.1|DT649496
EST:     AAGGCGATGAAATCTTTCGGCTCTTCCGAGCGGTACAAGCGATCCACGAG                         TGGCAGATATTTTGAGGATATGTATGCTACAGACGCTTTGCGTTCTTCAGA
genomic: AAGGCGATGAAATCTTTCGGCTCTTCCGAGCGGTACAAGCGATCCACGAGgttggtgtct ... gtttttccagTGGCAGATATTTTGAGGATATGTATGCTACAGACGCTTTGCGTTCTTCAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggggagggagggttcagatggaacaatgctcaaaatgcgattaatgtttttccagTGGCAGATATTTTGAGGATATGTATGCTACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCG
                                      gattaat  putative branch site (score: 3)
                                            tgtttttcc  CT-rich tract
                                       attaatgttttt  TA-rich tract