1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagcccttgtttctcttcttcgtctccgtcgctgtttgctcggtgtcttactggcttagactcgtttgcatatttttttttaaatttcagTTCTTGATTGACTCTTAGCTCTGCCGCGGCATGGAGGTGGAGGCTCTGGAGAAGAAGGGGCACGCAGCTTTTGCCAAGGCGATGAAATCTTTCGGCTCTT
species | Zea mays |
transcript | GRMZM5G843914_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCTACCGAGTTTCCGGGCGCTGACCACTGGGCAACTACAGCTGATCTCT TTCTTGATTGACTCTTAGCTCTGCCGCGGCATGGAGGTGGAGGCTCTGGAGEST: gi|149102755|gb|EE188278.2|EE188278
genomic: TGCTACCGAGTTTCCGGGCGCTGACCACTGGGCAACTACAGCTGATCTCTgtgagccctt ... taaatttcagTTCTTGATTGACTCTTAGCTCTGCCGCGGCATGGAGGTGGAGGCTCTGGAG
EST: TGCTACCGAGTTTCCGGGCGCTGACCACTGGGCAACTACAGCTGATCTCT TTCTTGATTGACTCTTAGCTCTGCCGCGGCATGGAGGTGGAGGCTCTGGAGEST: gi|148972521|gb|EE023482.2|EE023482
genomic: TGCTACCGAGTTTCCGGGCGCTGACCACTGGGCAACTACAGCTGATCTCTgtgagccctt ... taaatttcagTTCTTGATTGACTCTTAGCTCTGCCGCGGCATGGAGGTGGAGGCTCTGGAG
EST: TGCTACCGAGTTTCCGGGCGCTGACCACTGGGCAACTACAGCTGATCTCT TTCTTGATTGACTCTTAGCTCTGCCGCGGCATGGAGGTGGAGGCTCTGGAG
genomic: TGCTACCGAGTTTCCGGGCGCTGACCACTGGGCAACTACAGCTGATCTCTgtgagccctt ... taaatttcagTTCTTGATTGACTCTTAGCTCTGCCGCGGCATGGAGGTGGAGGCTCTGGAG
ttgctcggtgtcttactggcttagactcgtttgcatatttttttttaaatttcagTTCTTGATTGACTCTTAGCTCTGCCGCGGCATGGAGGTGGAGGCTCTGGAGAAGAAGGGGCACGCAGCTTTTGCCAAGGCGATGAAATCTTTCGGCTCTT
gtcttac putative branch site (score: 3)
tattttttttt putative PPT
tttgcatatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcccttgtttctcttcttcgtctccgtcgctgtttgctcggtgtcttactggcttagactcgtttgcatatttttttttaaatttcagTTCTTGATTGACTCTTAGCTCTGCCGCGGCATGGAGGTGGAGGCTCTGGAGAAGAAGGGGCACGCAGCTTTTGCCAAGGCGATGAAATCTTTCGGCTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT