1 5' 3' | 2 5' 3' | 3 5' 3' |
...aattatgatgtaatctgttccttaggcatcacatccagttgtcaaaacacttaaactttccagcagttccttattcctcatttttttcttgtatttgcagATAATGATGTTTCAGACAAGAGTTTTACTGGGAGGAATGAACATGTACGATCGCTACCAGGATTGGCGCCTTGATGTAGATAACATGACATACGAG
species | Zea mays |
transcript | GRMZM5G843389_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCGTCGGATGCGCGGGTACCGCTACTCCNCCGGAGGCCTCGAGGAAGAG ATAATGATGTTTCAGACAAGAGTTTTACTGGGAGGAATGAACATGTACGATEST: gi|211294173|gb|FL372478.1|FL372478
genomic: TCCGTCGGATGCGCGGGTACCGCTACTCCCCCGGAGGCCTCGAGGAAGAGgtacggcaca ... gtatttgcagATAATGATGTTTCAGACAAGAGTTTTACTGGGAGGAATGAACATGTACGAT
EST: TCCGTCGGATGCGCGGGTACCGCTACTCCCCCGGAGGCCTCGAGGAAGAG ATAATGATGTTTCAGACAAGAGTTTTACTGGGAGGAATGAACATGTACGATEST: gi|211518833|gb|FL412116.1|FL412116
genomic: TCCGTCGGATGCGCGGGTACCGCTACTCCCCCGGAGGCCTCGAGGAAGAGgtacggcaca ... gtatttgcagATAATGATGTTTCAGACAAGAGTTTTACTGGGAGGAATGAACATGTACGAT
EST: CCGTCGGATCGCGCGGGTACCGCTACTCCCCCGGAGGCCTCGAGGAAGAG ATAATGATGTTTCAGACAAGAGTTTTACTGGGAGGAATGAACATGTACGAT
genomic: CCGTCGGAT-GCGCGGGTACCGCTACTCCCCCGGAGGCCTCGAGGAAGAGgtacggcaca ... gtatttgcagATAATGATGTTTCAGACAAGAGTTTTACTGGGAGGAATGAACATGTACGAT
aacacttaaactttccagcagttccttattcctcatttttttcttgtatttgcagATAATGATGTTTCAGACAAGAGTTTTACTGGGAGGAATGAACATGTACGATCGCTACCAGGATTGGCGCCTTGATGTAGATAACATGACATACGAG
ttccttattcctcatt CT-rich tract
atttttttcttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattatgatgtaatctgttccttaggcatcacatccagttgtcaaaacacttaaactttccagcagttccttattcctcatttttttcttgtatttgcagATAATGATGTTTCAGACAAGAGTTTTACTGGGAGGAATGAACATGTACGATCGCTACCAGGATTGGCGCCTTGATGTAGATAACATGACATACGAG
- - -tgatgta
- - - - - - - ctgttcc
- - - - - - - - - - - - - - -cacatcc
- - - - - - - - - - - - - - - - - - - - - - aaacact