1 5' 3' | 2 5' 3' | 3 5' 3' |
...agccgacatttcatatacaatcaatatgttctcaatgtaaagcgaaaacttgtaggtgcaatgttcttccttgctgaataattgtagcacaatattgcagGTATTTCTCGCTTACTACAATGACTCCCTAGTGAGAGATGAGACATCAGGCCAAGTTGTTAGCTTTGGCGGAGTTGCTAAAATATTAGGGGGGCTAAATC
species | Zea mays |
transcript | GRMZM5G837606_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCAATGCACATGCCTGGACTTATAATACCATCATCTGATGACTCTAAG GTATTTCTTGCTTACTACAACGACTCCCTAGTGAGAGATGAGACATCAGGCEST: gi|211148354|gb|FL363513.1|FL363513
genomic: CTCCAATGCGCATGCCTGGACTTATAATACCATCATCTGATGACTCTAAGgtagggcagc ... aatattgcagGTATTTCTCGCTTACTACAATGACTCCCTAGTGAGAGATGAGACATCAGGC
EST: CTCCAATGCACATGCCTGGACTTATAATACCATCATCTGATGACTCTAAG GTATTTCTTGCTTACTACAACGACTCCCTAGTGAGAGATGAGACATCAGGCEST: gi|50337873|gb|CO532999.1|CO532999
genomic: CTCCAATGCGCATGCCTGGACTTATAATACCATCATCTGATGACTCTAAGgtagggcagc ... aatattgcagGTATTTCTCGCTTACTACAATGACTCCCTAGTGAGAGATGAGACATCAGGC
EST: CTCCAATGCGCATGCCTGGACTTATAATACCATCATCTGATGACTCTAAG GTATTTCTCGCTTACTACAATGACTCCCTAGTGAGAGATGAGACATCAGGCEST: gi|211446374|gb|FL309581.1|FL309581
genomic: CTCCAATGCGCATGCCTGGACTTATAATACCATCATCTGATGACTCTAAGgtagggcagc ... aatattgcagGTATTTCTCGCTTACTACAATGACTCCCTAGTGAGAGATGAGACATCAGGC
EST: CTCCAATGCACATGCCTGGACTTATAATACCATCATCTGATGACTCTAAG GTATTTCTTGCTTACTACAACGACTCCCTAGTGAGAGATGAGACATCAGGC
genomic: CTCCAATGCGCATGCCTGGACTTATAATACCATCATCTGATGACTCTAAGgtagggcagc ... aatattgcagGTATTTCTCGCTTACTACAATGACTCCCTAGTGAGAGATGAGACATCAGGC
aaacttgtaggtgcaatgttcttccttgctgaataattgtagcacaatattgcagGTATTTCTCGCTTACTACAATGACTCCCTAGTGAGAGATGAGACATCAGGCCAAGTTGTTAGCTTTGGCGGAGTTGCTAAAATATTAGGGGGGCTAAATC
aataattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agccgacatttcatatacaatcaatatgttctcaatgtaaagcgaaaacttgtaggtgcaatgttcttccttgctgaataattgtagcacaatattgcagGTATTTCTCGCTTACTACAATGACTCCCTAGTGAGAGATGAGACATCAGGCCAAGTTGTTAGCTTTGGCGGAGTTGCTAAAATATTAGGGGGGCTAAATC
- - - - -ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - -aggtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtagca