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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcagagctccgcgccgtcccctgccgtcattcagttcctcctgcccattcgcgcttggtttcagtggactgggggggtctgaacgtcacatgttctggctttgtttgatggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCATCACGCGGAAG

Basic information

species Zea mays
transcript GRMZM5G836910_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211140316|gb|FL028761.1|FL028761
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: gi|211235881|gb|FL028766.1|FL028766
EST:     CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211238121|gb|FL028781.1|FL028781
EST:     CTTCTCCGTCTCCTCGCCGGCGGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGG
genomic: CTTCTCTGTCTCCTCGCCGGC-GGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC-GG
EST: gi|16378665|gb|BI992547.1|BI992547
EST:     CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211238133|gb|FL028793.1|FL028793
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCG-STTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211240363|gb|FL028799.1|FL028799
EST:     CTTCTCCGTCTCCTCGCCGGCGGCCTCCG-CGTNCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGS
genomic: CTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGT-CGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211235883|gb|FL028768.1|FL028768
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|94477439|gb|EB706397.1|EB706397
EST:     CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|71440750|gb|DR821800.1|DR821800
EST:     CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211235892|gb|FL028777.1|FL028777
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211240361|gb|FL028797.1|FL028797
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: gi|149107658|gb|EE189537.2|EE189537
EST:     CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211235886|gb|FL028771.1|FL028771
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: gi|211140315|gb|FL028760.1|FL028760
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGC-C-ATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|149112604|gb|EE191381.2|EE191381
EST:     CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211238128|gb|FL028788.1|FL028788
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: gi|78104308|gb|DV522726.1|DV522726
EST:     CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211235895|gb|FL028780.1|FL028780
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: gi|76289791|gb|DV029359.1|DV029359
EST:     CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211140308|gb|FL028753.1|FL028753
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: gi|148941508|gb|EC886438.2|EC886438
EST:     CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211235888|gb|FL028773.1|FL028773
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: gi|211140313|gb|FL028758.1|FL028758
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211240365|gb|FL028801.1|FL028801
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: gi|211140307|gb|FL028752.1|FL028752
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|78114229|gb|DV532618.1|DV532618
EST:     CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211240360|gb|FL028796.1|FL028796
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: gi|211140314|gb|FL028759.1|FL028759
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211235884|gb|FL028769.1|FL028769
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|149000841|gb|EE038069.2|EE038069
EST:     CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211240366|gb|FL028802.1|FL028802
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: gi|211139377|gb|FL028748.1|FL028748
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: gi|211235891|gb|FL028776.1|FL028776
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211140317|gb|FL028762.1|FL028762
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: gi|71767561|gb|DR965498.1|DR965498
EST:     CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211139376|gb|FL028747.1|FL028747
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: gi|211140306|gb|FL028751.1|FL028751
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211238122|gb|FL028782.1|FL028782
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: gi|211238131|gb|FL028791.1|FL028791
EST:     CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG                         GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 20

CGCCTCCGATCCGCTGCTTACTCGCCACCCGGAGATGGCCACCGCCGCCGCCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCATCACGCGGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 50

CGCCTCCGATCCGCTGCTTACTCGCCACCCGGAGATGGCCACCGCCGCCGCCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCATCACGCGGAAG


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 12

CGCCTCCGATCCGCTGCTTACTCGCCACCCGGAGATGGCCACCGCCGCCGCCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCATCACGCGGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 109

CGCCTCCGATCCGCTGCTTACTCGCCACCCGGAGATGGCCACCGCCGCCGCCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCATCACGCGGAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtggactgggggggtctgaacgtcacatgttctggctttgtttgatggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCATCACGCGGAAG
                                        gtttgat  putative branch site (score: 109)
                                     tttgttt  TA-rich tract