Sequence
atgc intronic sequence ATGC exonic sequence...gattaaatcatgcatctttcagacaaaacattatgtatctattctttcagaccatcggttatatctacttatttcggttataaatacttcttttctgtagGTCGTTAGGCCAGGCAACACGATCAGTGACAGCTTTCGCAGAAGGCCAAGGAGCAGCACATAGAATGTTCAAGATAATTGAACGCAAGCCAGATATTGAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G836897_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g34970.1 (Oryza sativa), 3'ss of exon 5
gattaaatcatgcatcttt-cagacaaaacattatgtatctattctttcagaccatcggttatatctacttatttc-ggttataaatacttcttttctgtagGTCGTTAGGCCAGGCAACACGATCAGTGACAGCTTTCGCAGAAGGCCAAGGAGCAGCACATAGAATGTTCAAGATAATTGAACGCAAGCCAGATATTGAC
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agtgaaactagtcatattaacatgtgaaataaattatttccatgtcactg--tcatttttcaggtcatctggttcctgatttggcttatatgtcttctgtagGTCCTTAGGTCAGGCAACACCATCAATAACAGCTTTTGCAGAAGGTCAAGGAGCAGCATATAGAATGTTTAAGACAATCAAAAGACAGCCAGATATTGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcagaccatcggttatatctacttatttcggttataaatacttcttttctgtagGTCGTTAGGCCAGGCAACACGATCAGTGACAGCTTTCGCAGAAGGCCAAGGAGCAGCACATAGAATGTTCAAGATAATTGAACGCAAGCCAGATATTGAC
tacttcttttctgt CT-rich tract
ttataaatacttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gattaaatcatgcatctttcagacaaaacattatgtatctattctttcagaccatcggttatatctacttatttcggttataaatacttcttttctgtagGTCGTTAGGCCAGGCAACACGATCAGTGACAGCTTTCGCAGAAGGCCAAGGAGCAGCACATAGAATGTTCAAGATAATTGAACGCAAGCCAGATATTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - -tcatgca
- - - - - - - - - - agacaaa
- - - - - - - - - - - - - - - -tatgtat