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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtaccgccctcccgcccgcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgcgcgcgcgcgcgcgctgctgcgccctgttctgacgcctctccgccgcgtggatctggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCATCTGCTCGAGCACGTCATGAGCGCGCTGTCGCCGGACATCGGCCGCGAAG

Basic information

species Zea mays
transcript GRMZM5G836628_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G836628_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g49040.1 (Oryza sativa), 3'ss of exon 1
gtacgtaccgccctcccgcccgcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgcgcgcgcgcgcgcgctgctgcgccctgttctgacgcctctccgccgcgtggatctggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCATCTGCTCGAGCACGTCATGAGCGCGCTGTCGCCGGACATCGGCCGCGAAG
                                       ||  ||||  ||   |||    |||  | |   ||  ||  ||  || ||    |||    ||  |      | |||||||   |   | ||  |   || |    ||  ||           | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
----------------------------------gtatccttcctcttccttgatctactactccattttattcattcattcattcactactcctcctcatcatgt-----cacgcgctggatccgtccgtctt--tgcttgcttgcttcgc----------ctcagGTGTTCGACGGCCACAACGGGGTCTCGGCGGCGGTCTACAGCAAGGAGCATTTGCTCGAGCACGTCATGAGCGCGCTGCCGCCGGACATCGGCCGCGACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148939550|gb|EC884154.2|EC884154
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|76018331|gb|DT945501.1|DT945501
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|93012388|gb|EB637908.1|EB637908
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|148943613|gb|EC888676.2|EC888676
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|148932058|gb|EC875401.2|EC875401
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|71430183|gb|DR811233.1|DR811233
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|91876506|gb|EB406463.1|EB406463
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|211437660|gb|FL213990.1|FL213990
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAG-AGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|149109561|gb|EE190266.2|EE190266
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|148967746|gb|EE019020.2|EE019020
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|211500611|gb|FL213997.1|FL213997
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAG-AGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|91050128|gb|EB160546.1|EB160546
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|148958254|gb|EC904468.2|EC904468
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|149014901|gb|EE044621.2|EE044621
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|149103553|gb|EE288950.2|EE288950
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|211500610|gb|FL213996.1|FL213996
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|211439135|gb|FL160132.1|FL160132
EST:     ACTACCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTCGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|78110646|gb|DV529051.1|DV529051
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|211437663|gb|FL213993.1|FL213993
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGBCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
EST: gi|149101969|gb|EE287481.2|EE287481
EST:     ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCC                         GTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT
genomic: ACTGCCTCCGCGTCCCCGGGGACCCCGCATCCGCGTTCTCCGTCTTTGCCgtacgtaccg ... tggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgcgctgctgcgccctgttctgacgcctctccgccgcgtggatctggcgcgcagGTGTTCGACGGCCACAACGGCGTGTCGGCGGCGGTCTACAGCAAGGAGCATCTGCTCGAGCACGTCATGAGCGCGCTGTCGCCGGACATCGGCCGCGAAG
                  ttctgac  putative branch site (score: 2)