Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggagaaacttatcctatattttgtagatgtttgggtctgtgatatggtttcctttgtctacaccgaatgttctaattatctatatcgttcctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG

Basic information

species Zea mays
transcript GRMZM5G835323_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G835323_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g34589.4 (Oryza sativa), 3'ss of exon 1
---ggagaaacttatcctatattttgtagatgtttgggtctgtgatatggtttcctttgt--ctacaccgaatgttctaattatctatatcgttcctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG
   ||  |  | |   ||   |  | || |        | | |||    ||   |    |   || || |  |||||| || ||  ||    ||||||||| ||| |||||||||||||||||||| ||||||   |||||| ||||||||||||||||||||||||||||||||||||||
tttggttattccttgactgcttgat-tacagaaagaaatttatgaagctgtaatcgggatagttatactgcttgttcttatgattcat----ttcctttgtgcagTTCTTGGTGTAGCTTGCCACTTTCACCAGCAAAGTTT-CATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33103516|gb|CF063476.1|CF063476
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211459441|gb|FL427670.1|FL427670
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|213175042|gb|FM189247.1|FM189247
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|32840422|gb|CD980103.1|CD980103
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211133228|gb|FL428368.1|FL428368
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|33103398|gb|CF063358.1|CF063358
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211270852|gb|FL369235.1|FL369235
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211502483|gb|FL420282.1|FL420282
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211509586|gb|FL422063.1|FL422063
EST:     TCCCAAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|21621225|gb|BQ619231.1|BQ619231
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211337138|gb|FL423320.1|FL423320
EST:     CCCGAGCGAGTTCTTGGTTGACCTCTTCCCCCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: CCCGAGCGAGTTCTTGGTTGACCTCTTCCTC-TTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|71767976|gb|DR965913.1|DR965913
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|194716800|gb|FK933959.1|FK933959
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211199602|gb|FL408265.1|FL408265
EST:     TCCCGAGCGAGNTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGNAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211498978|gb|FL377918.1|FL377918
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|488211|gb|T18792.1|T18792
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|50332863|gb|CO527989.1|CO527989
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|8367164|gb|BE050109.1|BE050109
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|32934420|gb|CF039232.1|CF039232
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTCCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|60356711|gb|DN223684.1|DN223684
EST:     TGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211059842|gb|FL382530.1|FL382530
EST:     CCCGAGCGAGTTCTTGGTTGACCTCTTCCCCCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: CCCGAGCGAGTTCTTGGTTGACCTCTT-CCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211105435|gb|FL420496.1|FL420496
EST:     CCCGAGCGAGTTCTTGGTTGACCTCTTCCCCCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: CCCGAGCGAGTTCTTGGTTGACCTCTTCCTC-TTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211485134|gb|FL401515.1|FL401515
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211420782|gb|FL379127.1|FL379127
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|213179245|gb|FM196370.1|FM196370
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|91050722|gb|EB161140.1|EB161140
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211390688|gb|FL420223.1|FL420223
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|33104136|gb|CF064096.1|CF064096
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|71441941|gb|DR822991.1|DR822991
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|33104030|gb|CF063990.1|CF063990
EST:     TCCCGAGCGAGTTCCTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|33102696|gb|CF062656.1|CF062656
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCGATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|7227454|gb|AW566095.1|AW566095
EST:     CCCGAGCGAGTTCTTGGTTGACCTCTTCCCCCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: CCCGAGCGAGTTCTTGGTTGACCTCTT-CCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211116916|gb|FL407738.1|FL407738
EST:     CCCGAGCGAGTTCTTGGTTGACCTCTTCCCCCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: CCCGAGCGAGTTCTTGGTTGACCTCTT-CCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|32865910|gb|CF005592.1|CF005592
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|32855909|gb|CD995590.1|CD995590
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211353298|gb|FL394322.1|FL394322
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211509019|gb|FL391696.1|FL391696
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTACCTTGNCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211155031|gb|FL401255.1|FL401255
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211111816|gb|FL370871.1|FL370871
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|33104105|gb|CF064065.1|CF064065
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|6952440|gb|AW424508.1|AW424508
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACC
EST: gi|78080734|gb|DV509146.1|DV509146
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211321884|gb|FL419685.1|FL419685
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211183050|gb|FL425700.1|FL425700
EST:     CCCGAGCGAGTTCTTGGTTGACCTCTTCCCCCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: CCCGAGCGAGTTCTTGGTTGACCTCTT-CCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211178019|gb|FL396087.1|FL396087
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211387302|gb|FL388829.1|FL388829
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|33103702|gb|CF063662.1|CF063662
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211439141|gb|FL388412.1|FL388412
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|193503172|gb|AM937584.1|AM937584
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|7031350|gb|AW461088.1|AW461088
EST:     TCCCGAGCGAGTTCTTGGNTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211294664|gb|FL395563.1|FL395563
EST:     CCGAGGCGAGTTCTTGGTTGACCTCTTCCCCCTTCGGACCACCTCCAAGG                         CTCTKGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: CCGA-GCGAGTTCTTGGTTGACCTCTT-CCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211389988|gb|FL390663.1|FL390663
EST:     CCCGAGCGAGTTCTTGGTTGACCTCTTCCCCCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: CCCGAGCGAGTTCTTGGTTGACCTCTTCCTC-TTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211358891|gb|FL423673.1|FL423673
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCT
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTC-TTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCT
EST: gi|211423942|gb|FL408408.1|FL408408
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211167944|gb|FL396002.1|FL396002
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|33103735|gb|CF063695.1|CF063695
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCCCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|7844197|gb|AW787419.1|AW787419
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|32858993|gb|CD998674.1|CD998674
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTAGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211217949|gb|FL419213.1|FL419213
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211239060|gb|FL421818.1|FL421818
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|8368445|gb|BE051390.1|BE051390
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|33103439|gb|CF063399.1|CF063399
EST:     TTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|33104070|gb|CF064030.1|CF064030
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CCCTTGGTGTAGCTTGCCGCTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211016652|gb|FL375787.1|FL375787
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|32916209|gb|CF021021.1|CF021021
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|91871868|gb|EB401825.1|EB401825
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|32910303|gb|CF015115.1|CF015115
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|71761988|gb|DR959925.1|DR959925
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|32831075|gb|CD970753.1|CD970753
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|21390566|gb|BQ528615.1|BQ528615
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|1298543|gb|W21723.1|W21723
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|78112906|gb|DV531300.1|DV531300
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211134764|gb|FL389926.1|FL389926
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|4152099|gb|AI372233.1|AI372233
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|32915098|gb|CF019910.1|CF019910
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|32915212|gb|CF020024.1|CF020024
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|37425720|gb|CF650607.1|CF650607
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|32915157|gb|CF019969.1|CF019969
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|13126264|gb|BG316834.1|BG316834
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTT
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTT
EST: gi|211071915|gb|FL417754.1|FL417754
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|14204119|gb|BG837796.1|BG837796
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|8367743|gb|BE050688.1|BE050688
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|32855907|gb|CD995588.1|CD995588
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211524400|gb|FL405464.1|FL405464
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         TTCTTGGNGTAGCTTGCTACTCTCACCAAT
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAAT
EST: gi|211202308|gb|FL411328.1|FL411328
EST:     CCCGAGCGAGTTCTTGGTTGACCTCTTCCCCCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: CCCGAGCGAGTTCTTGGTTGACCTCTT-CCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|60395875|gb|DN228745.1|DN228745
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211013861|gb|FL375761.1|FL375761
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211363247|gb|FL387040.1|FL387040
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCT
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTC-TTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCT
EST: gi|33102726|gb|CF062686.1|CF062686
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|33104061|gb|CF064021.1|CF064021
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|44682066|gb|CK787114.1|CK787114
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211493809|gb|FL402018.1|FL402018
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|32914506|gb|CF019318.1|CF019318
EST:     TCCCGAGCGAGTTCTTGGTTGGCCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACAAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211100489|gb|FL420474.1|FL420474
EST:     CCCGAGCGAGTTCTTGGTTGACCTCTTCCCCCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: CCCGAGCGAGTTCTTGGTTGACCTCTTCCTC-TTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|211243486|gb|FL420086.1|FL420086
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
EST: gi|193503187|gb|AM937599.1|AM937599
EST:     TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGG                         CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC
genomic: TCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1022

AAGAGGGAAGAGCACCAAGGACCTTCGGCGCCCGTTCAGGATCCACATCTTCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 6026

AAGAGGGAAGAGCACCAAGGACCTTCGGCGCCCGTTCAGGATCCACATCTTCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 6792

AAGAGGGAAGAGCACCAAGGACCTTCGGCGCCCGTTCAGGATCCACATCTTCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2361

AAGAGGGAAGAGCACCAAGGACCTTCGGCGCCCGTTCAGGATCCACATCTTCCCGAGCGAGTTCTTGGTTGACCTCTTCCTCTTCGGACCACCTCCAAGGgtatgcaccc ... ctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttcctttgtctacaccgaatgttctaattatctatatcgttcctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG
                        ttctaat  putative branch site (score: 2361)
                                       tcgttccttt  putative PPT
                        ttctaattatctatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggagaaacttatcctatattttgtagatgtttgggtctgtgatatggtttcctttgtctacaccgaatgttctaattatctatatcgttcctttgtacagCTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG

- - - - - - - - - - - - - atgtttg