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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttcttcatttaagacaaatgcgaactgcgttatgaaatcatagatgttatctctgttcttcatagaaccttttgcttacacttgtatgtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGCGT

Basic information

species Zea mays
transcript GRMZM5G835213_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 1
gttttcttcatttaagacaaatgcgaactgcgttatgaaatcatagatgttatctctgttcttcatagaaccttttgctt-acacttgtatgtcttt---gcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGCGT
 ||||  || ||||   |   | | | || | |     ||| ||     ||||      | |   |  | | ||||  || |||||  |||   |||   ||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| || ||
cttttgctcctttatttcttcttctatctcctt----gaattattttcattataaaatatttaagtgcaccattttttttgacactaatattattttctggcagATAGAGCCCATTGTTAGTGGCAACCTGCCTCCTGGATTTGATTCAAGTACATGCCGGAGTGT

upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA13G17200.2 (Glycine max), 3'ss of exon 1
gttttcttcatttaagacaaatgcgaactgcgttatgaaa-tcatagatgttatctctgttcttcatagaaccttttgcttacacttgtatgtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGCGT
||||  ||   || ||   |  |   | ||  ||||     |  ||||   | | | | | |||  |      || |  ||  || | | | | ||||||||||||||| ||  | |||||||| ||||| ||||| |||||||| ||| |||||||||| ||
gtttgattagatttagttgagaggagagtggattattttgcttttagaaactctttttttcctttttttttgtttgtctttttacatctttat-tttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGT

upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G01230.1 (Glycine max), 3'ss of exon 1
--------gttttcttcatttaagacaaatgcgaactgcgttatgaaatcatagatgttatctctgttcttcatagaaccttttgcttacacttgtatgtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGCGT
         || |||  |||   |  | || | |      || |       | ||| |   |||| ||     |    | ||    || ||||| |   | ||||||||| || || ||    |||||||| ||||||||||| |||||| ||||||| |||||||| ||
cttctctcattctctgtatt---ggtagatacaatacaatttttttccctcttgatttgccctctttttccttt----ctttcctttttcacttcttcat-tttgcagATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGT

upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA17G05530.4 (Glycine max), 3'ss of exon 2
-------gttttcttcatttaagacaaatgcgaactgcgtt-atgaaatcatagatgttatctctgttcttcatagaaccttttgcttacacttgtatgtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGCGT
       | ||| ||   |||    |  || ||   | ||  || |  | |    |   | |||| || ||       |  | | |||||| || |||   ||||||||||||||| ||  | |||||||| ||||| ||||| |||||||| ||| |||||||||| ||
gaaatgcgatttgtttgattagattagttgagaggagggtggataattttacttttaggaactcttttttttt-----ctgtcttcttacatttttat---tttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGT

upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 3'ss of exon 1
---gttttcttcatttaagacaaatgcgaactgcgttatgaaatcatagatgttatctctgttcttcatagaaccttttgcttacacttgtatgtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGCGT
     ||| |  || || || |    |  | || ||  ||| ||  ||  | |    | | || ||| |    |  |||  | ||| || |||   ||||||||||||||| ||  | |||||||| ||||||||||||||||||||||||||||||||||| ||
gtgtctttatatatctatgaaatgctctcagtgagtgttgatattttatttctaggatttttttttcttctttctattttttcacatttttat---tttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGT

upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 3'ss of exon 1
gttttcttcatttaagacaaatgcgaact-gcgttatgaaatcatagatgttatctctgttcttcatagaaccttttgcttacacttgtatgtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGCGT
  ||  |     ||    |  |  |  || |  || | | || ||   |||| | | | ||  |  ||    |||||  ||       | |   ||||||||||||||| |||   |||||||| ||||||||||| ||||||||||||||||||||||| ||
-cttgatgtgggtagatgatttaggggcttgtctttttatattatttttgttctttttctttcttttattttcttttcttttttacatttttattttgcagATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACATGCCGCAGTGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71328163|gb|DR800724.1|DR800724
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|76916928|gb|DV166611.1|DV166611
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|71449843|gb|DR830893.1|DR830893
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|50328157|gb|CO523283.1|CO523283
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|149005281|gb|EE039830.2|EE039830
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|71764597|gb|DR962534.1|DR962534
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|148944552|gb|EC889676.2|EC889676
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|149096874|gb|EE182668.2|EE182668
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|71428352|gb|DR809402.1|DR809402
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|148965511|gb|EE016330.2|EE016330
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|93013850|gb|EB639370.1|EB639370
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|71760191|gb|DR958128.1|DR958128
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|50322712|gb|CO517838.1|CO517838
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGGGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|149098619|gb|EE184624.2|EE184624
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|148938880|gb|EC883234.2|EC883234
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|94475248|gb|EB704206.1|EB704206
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|71324258|gb|DR798829.1|DR798829
EST:     CCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|149111090|gb|EE294586.2|EE294586
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|148972836|gb|EE023824.2|EE023824
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|148961382|gb|EE012120.2|EE012120
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|149103764|gb|EE289171.2|EE289171
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|149104833|gb|EE290297.2|EE290297
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|149095084|gb|EE180690.2|EE180690
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|71431558|gb|DR812608.1|DR812608
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|149073417|gb|EE161721.2|EE161721
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|71773943|gb|DR971831.1|DR971831
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|149079527|gb|EE168509.2|EE168509
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|71756632|gb|DR954569.1|DR954569
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|149004891|gb|EE039402.2|EE039402
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
EST: gi|149084914|gb|EE174423.2|EE174423
EST:     CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAG                         ATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA
genomic: CCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 457

GCAGCAGGCACTGCTCCTGCAGCAGCAGCAGCAGTCGCAGGCGCAGCCGCCCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 362

GCAGCAGGCACTGCTCCTGCAGCAGCAGCAGCAGTCGCAGGCGCAGCCGCCCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGCGT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 355

GCAGCAGGCACTGCTCCTGCAGCAGCAGCAGCAGTCGCAGGCGCAGCCGCCCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGCGT


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 509

GCAGCAGGCACTGCTCCTGCAGCAGCAGCAGCAGTCGCAGGCGCAGCCGCCCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGgtggggcaat ... gtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGCGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgttatctctgttcttcatagaaccttttgcttacacttgtatgtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGCGT
                              tgcttac  putative branch site (score: 509)
                                            tgtcttt  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttttcttcatttaagacaaatgcgaactgcgttatgaaatcatagatgttatctctgttcttcatagaaccttttgcttacacttgtatgtctttgcagATAGAGCCCATAGTCAGTGGAAACCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGCGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - ttcattt
- - - - - - - - -caaatgc
- - - - - - - - - - - - gaactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtat