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...cataagtcgtggctcgtgggttgccatttggaaaagggtgggtttttttttgttcacttgaatgatgtgttgattttctgtttcctgtcactgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG
species | Zea mays |
transcript | GRMZM5G834205_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|50325447|gb|CO520573.1|CO520573
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|93017403|gb|EB642923.1|EB642923
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|50339160|gb|CO534286.1|CO534286
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|50325060|gb|CO520186.1|CO520186
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|71320277|gb|DR796887.1|DR796887
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|148952813|gb|EC898805.2|EC898805
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|37394180|gb|CF634361.1|CF634361
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: TGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: TGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
ttttttgttcacttgaatgatgtgttgattttctgtttcctgtcactgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG
tgttgat putative branch site (score: 4)
ttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cataagtcgtggctcgtgggttgccatttggaaaagggtgggtttttttttgttcacttgaatgatgtgttgattttctgtttcctgtcactgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT