1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttggtgcgcgctaccgcttccctccccttctgctccccgtcgacgccatctcctcagccccagattgcatctccctcttcttcctctggttctttcggcccgggcagaatgcctcttttttttcttcttcttcttactcgcaggctgcgggcttatgctcgaaggcgcgatctttacgctcggagtggcttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATACCGGGGCCGGCCTGGATTTGCTCGAGAGTGAGAGGAAGGCGTAACAGTG
species | Zea mays |
transcript | GRMZM5G834205_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCTTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCCTGCGGCTGCGGAATAEST: gi|78116689|gb|DV535076.1|DV535076
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|211276228|gb|FL230643.1|FL230643
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|89250673|gb|DY622459.1|DY622459
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|211276231|gb|FL230646.1|FL230646
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAWTAEST: gi|74245588|gb|DT653502.1|DT653502
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|149083865|gb|EE173240.2|EE173240
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|149079653|gb|EE168650.2|EE168650
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|149088094|gb|EE177262.2|EE177262
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|211276224|gb|FL230639.1|FL230639
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CGTCGCCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|76291818|gb|DV031386.1|DV031386
genomic: CGTCG-CCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCT-- -AGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|88752284|gb|DY536425.1|DY536425
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|76281750|gb|DV021318.1|DV021318
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|76924364|gb|DV169917.1|DV169917
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|149105966|gb|EE291599.2|EE291599
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|211276230|gb|FL230645.1|FL230645
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCKTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|71428014|gb|DR809064.1|DR809064
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|211276222|gb|FL230637.1|FL230637
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCTTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCCTGCGGCTGCGGAATAEST: gi|211276225|gb|FL230640.1|FL230640
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|149102742|gb|EE288091.2|EE288091
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|78091791|gb|DV520165.1|DV520165
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|86465690|gb|DY232063.1|DY232063
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGAGGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|148938287|gb|EC882591.2|EC882591
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|76282168|gb|DV021736.1|DV021736
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|71326005|gb|DR799685.1|DR799685
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|211276226|gb|FL230641.1|FL230641
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCTTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCCTGCGGCTGCGGAATAEST: gi|86472431|gb|DY238801.1|DY238801
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|149095623|gb|EE174749.2|EE174749
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATAEST: gi|101391434|gb|EB817652.1|EB817652
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
EST: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAG GAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
genomic: CCGTCGCCAGCCAAAATCCACTAGCAGCGCGTAACCTCCTGCCGATCTAGgttggtgcgc ... ttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATA
ctgcgggcttatgctcgaaggcgcgatctttacgctcggagtggcttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATACCGGGGCCGGCCTGGATTTGCTCGAGAGTGAGAGGAAGGCGTAACAGTG
cttcgtttc CT-rich tract
atcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtgcgcgctaccgcttccctccccttctgctccccgtcgacgccatctcctcagccccagattgcatctccctcttcttcctctggttctttcggcccgggcagaatgcctcttttttttcttcttcttcttactcgcaggctgcgggcttatgctcgaaggcgcgatctttacgctcggagtggcttcgtttcagGAGACGGGGGATTTCTTCTCGCCCTTTTCCTCGCCTTGCGGCTGCGGAATACCGGGGCCGGCCTGGATTTGCTCGAGAGTGAGAGGAAGGCGTAACAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA