1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggcggattccggaaccgggcgcagacggcggatctctttggttatgctgcgatttgctgcttgtctaacacgttgccgactgccgtgtgatgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACCCCAAGCTCCCCAAGGGGAAACCGGTGGCTGTCGTCGTGCTGGACGGAT
species | Zea mays |
transcript | GRMZM5G833389_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211136895|gb|FK961399.1|FK961399
genomic: GTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211136889|gb|FK961393.1|FK961393
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211135008|gb|FK961373.1|FK961373
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211137829|gb|FK961411.1|FK961411
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211135007|gb|FK961372.1|FK961372
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211135946|gb|FK961386.1|FK961386
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211135939|gb|FK961379.1|FK961379
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211135943|gb|FK961383.1|FK961383
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211135941|gb|FK961381.1|FK961381
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211136902|gb|FK961406.1|FK961406
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211137828|gb|FK961410.1|FK961410
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211134061|gb|FK961356.1|FK961356
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211134998|gb|FK961363.1|FK961363
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211135009|gb|FK961374.1|FK961374
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211135942|gb|FK961382.1|FK961382
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|148961947|gb|EE012741.2|EE012741
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: GCAAAAGCAGAAGCAAAAAGAGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211135951|gb|FK961391.1|FK961391
genomic: GCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211135005|gb|FK961370.1|FK961370
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: AGGCAAAAGCAGAAGCAAAAAGAGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211135004|gb|FK961369.1|FK961369
genomic: AGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211136898|gb|FK961402.1|FK961402
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211135000|gb|FK961365.1|FK961365
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACEST: gi|211135012|gb|FK961377.1|FK961377
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
EST: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCNNNNNNNGAAAG GTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
genomic: CAAGAGTTCTTCTTGTTAGGCAAGGCAAAAGCAGAAGCAAAAAGAGAAAGgtaagaacag ... tgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCAC
gctgcgatttgctgcttgtctaacacgttgccgactgccgtgtgatgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACCCCAAGCTCCCCAAGGGGAAACCGGTGGCTGTCGTCGTGCTGGACGGAT
gtctaac putative branch site (score: 174)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcggattccggaaccgggcgcagacggcggatctctttggttatgctgcgatttgctgcttgtctaacacgttgccgactgccgtgtgatgtttggtagGTCTTGTTGCCGATGGGGAGCTCAGGGTTCTCGTGGACGCTTCCGGACCACCCCAAGCTCCCCAAGGGGAAACCGGTGGCTGTCGTCGTGCTGGACGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA