Sequence
atgc intronic sequence ATGC exonic sequencegtattcccaaacccattccctttagcagtgcaataataataaaaaacaccgatttcctcatttttttccgttgttatctagcgcacaaccaccgaatacagtttaatagattgctattgatgaaggacacgaagttgtttacagagctgattgtttggcgttcgtatgtgtactggtgtgcagAGTGGAGGATGGTTCTCGTGGACTTGAGGAACCATGGCAGATCGGCTGGGATCAAGGGGCTCGGCCCACCCCACAACATATCTACTGCCGCCAAGGACCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G831584_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g64262.1 (Oryza sativa), 3'ss of exon 1
gtattcccaaacccattccctttagcagtgcaataataataaaaaacaccgatttcctcatttttttccgttgttatct-agcgcacaaccaccgaatacagtttaatagattgctattgatgaaggacacgaagttgtttacagagctgattgtttggcgttc---gtatgtgtactggtgtgcagAGTGGAGGATGGTTCTCGTGGACTTGAGGAACCATGGCAGATCGGCTGGGATCAAGGGGCTCGGCCCACCCCACAACATATCTACTGCCGCCAAGGACCT
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-----------------------------------------gtatgcctcaaattcctcgtactatttagcaatgttctcgatgtgcaac-----gataggatttgatcgttgg-----gatggagggaatcatttcaccta--ggctgaattttgtgccgttctgtgatcatgcctctgcctgtagAGTGGAGAATGGTTCTCGTGGATTTGAGGAACCACGGGAGATCAGCGGGGATCAAGGGCCTGAGGCCGCCGCATGACATGTCAACTGCGGCCAGGGACCT
upper sequence: GRMZM5G831584_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv08s0007g03010.t01 (Vitis vinifera), 3'ss of exon 1
gtattcccaaacccattccctttagcagtgcaataataataaaaaacaccgatttcctcatttttttccgttgttatctagcgcacaaccaccgaatacagtttaatagattgctattgatgaaggacacgaagttgtttacagagctgattgtttggcgttcgtatgtgtactggtgtgcagAGTGGAGGATGGTTCTCGTGGACTTGAGGAACCATGGCAGATCGGCTGGGATCAAGGGGCTCGGCCCACCCCACAACATATCTACTGCCGCCAAGGACCT
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--------------------------------------------------------------------------ggatttgaaagttttctgggaatatag---aatg---tgtgttaaattgtgtattcacttatatcttcttacttttctgt---gagattgaacaaatttttgtatgtagATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGGTAGAAGGTTTATATCCACCTCATGACATTGTCAATGCTGCTCAAGATTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211176759|gb|FL088435.1|FL088435EST: CTTCTCTCGCGCCCTCGTCTCCGAACTCCGTAACCGCTCCCCTTCAGACG AGTGGAGGATGGTTCTCGTGGACTTGAGGAACCATGGCAGATCGGCTGGGA
genomic: CTTCTCTCGCGCCCTCGTCTCCGAACTCCGTAACCGCTCCCCTTCAGACGgtattcccaa ... tggtgtgcagAGTGGAGGATGGTTCTCGTGGACTTGAGGAACCATGGCAGATCGGCTGGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acgaagttgtttacagagctgattgtttggcgttcgtatgtgtactggtgtgcagAGTGGAGGATGGTTCTCGTGGACTTGAGGAACCATGGCAGATCGGCTGGGATCAAGGGGCTCGGCCCACCCCACAACATATCTACTGCCGCCAAGGACCT
agctgat putative branch site (score: 4)
ttgttta TA-rich tract