1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgggtgccctgtttctcttgaatccaagttcgctgcttggggtcggaaactctgaaataggcgggtgcctggtggtgttcgagaagtaaaaagaatgctcatggatggttggttggttggcggatcgccggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTCGTCGAGCATGGCATGGCTGACGGCCGCCTTTGCATCGTCTCCAAGGAG
species | Zea mays |
transcript | GRMZM5G828229_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211467623|gb|FL333695.1|FL333695
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211062178|gb|FL359484.1|FL359484
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTMTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211399942|gb|FL360079.1|FL360079
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAKGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|22545888|gb|BU098127.1|BU098127
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: GGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTEST: gi|211154097|gb|FL335993.1|FL335993
genomic: GGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACC-GCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGT
EST: CGGACCTTCTCGGTCTCCGCGGCGGC-GGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|149075601|gb|EE164139.2|EE164139
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211149413|gb|FL321993.1|FL321993
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211306680|gb|FL364491.1|FL364491
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211333832|gb|FL364099.1|FL364099
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211075749|gb|FL351701.1|FL351701
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGHGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGGATGGGAACGCTGCGGGTTACGCCGCCAGGACGEST: gi|148990927|gb|EE032350.2|EE032350
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGG-A-GGGAACGCTGCGGGTTACGCCGCCAGGACG
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211270379|gb|FL351863.1|FL351863
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|21621068|gb|BQ619074.1|BQ619074
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|87156678|gb|DY401467.1|DY401467
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|148931379|gb|EC874296.2|EC874296
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|148931941|gb|EC875173.2|EC875173
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|148995891|gb|EE035131.2|EE035131
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|78103956|gb|DV522374.1|DV522374
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211267804|gb|FL345561.1|FL345561
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211157246|gb|FL334279.1|FL334279
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211098259|gb|FL316228.1|FL316228
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211511443|gb|FL329917.1|FL329917
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211043461|gb|FL324043.1|FL324043
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|148957061|gb|EC903025.2|EC903025
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211297775|gb|FL337585.1|FL337585
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|211004058|gb|FL319209.1|FL319209
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|88750901|gb|DY535042.1|DY535042
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: GGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAAAACCGCGA GTATGTGATCGTCGGGGGAGGAAACGCTGCGGGTTACCCCGCCAGGACGTTEST: gi|211472696|gb|FL333736.1|FL333736
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAG-ACGTTEST: gi|26558495|gb|CA830730.1|CA830730
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTEST: gi|6587631|gb|AW244949.1|AW244949
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
aagtaaaaagaatgctcatggatggttggttggttggcggatcgccggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTCGTCGAGCATGGCATGGCTGACGGCCGCCTTTGCATCGTCTCCAAGGAG
aaaagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtgccctgtttctcttgaatccaagttcgctgcttggggtcggaaactctgaaataggcgggtgcctggtggtgttcgagaagtaaaaagaatgctcatggatggttggttggttggcggatcgccggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTTCGTCGAGCATGGCATGGCTGACGGCCGCCTTTGCATCGTCTCCAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG