1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttgcattgctggttttcatttttaacattattcttccatgctcatcagtgaaaaaaattgcttgatgtggatgtctgatatgtttttattgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCATTCCAAGGCCATCCACTAGGGGACACAATATTAGGTCCTGAAGAAAATA
species | Zea mays |
transcript | GRMZM5G827505_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAG GTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCAEST: gi|91055519|gb|EB165937.1|EB165937
genomic: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAGgtgagctttt ... tgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCA
EST: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAA GTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCEST: gi|148983190|gb|EE029136.2|EE029136
genomic: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAGgtgagctttt ... tgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGC
EST: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAG GTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCAEST: gi|101389579|gb|EB816722.1|EB816722
genomic: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAGgtgagctttt ... tgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCA
EST: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAG GTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATEST: gi|71430235|gb|DR811285.1|DR811285
genomic: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAGgtgagctttt ... tgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCAT
EST: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAG GTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCAEST: gi|149009597|gb|EE041558.2|EE041558
genomic: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAGgtgagctttt ... tgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCA
EST: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAG GTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCAEST: gi|74244154|gb|DT652068.1|DT652068
genomic: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAGgtgagctttt ... tgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCA
EST: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAG GTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCAEST: gi|148959580|gb|EC905539.2|EC905539
genomic: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAGgtgagctttt ... tgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCA
EST: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAG GTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAACAEST: gi|91056228|gb|EB166646.1|EB166646
genomic: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAGgtgagctttt ... tgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCA
EST: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAG GTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCAEST: gi|71436989|gb|DR818039.1|DR818039
genomic: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAGgtgagctttt ... tgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCA
EST: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAG GTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCAEST: gi|149078045|gb|EE166785.2|EE166785
genomic: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAGgtgagctttt ... tgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCA
EST: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAG GTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCA
genomic: AAAGGGCTATCCAGCGGGAGCGCGGCGTCATCCTCCGTGAGATGGAGGAGgtgagctttt ... tgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCA
tcagtgaaaaaaattgcttgatgtggatgtctgatatgtttttattgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCATTCCAAGGCCATCCACTAGGGGACACAATATTAGGTCCTGAAGAAAATA
gtctgat putative branch site (score: 41)
tttttatt putative PPT
tgatatgtttttattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgcattgctggttttcatttttaacattattcttccatgctcatcagtgaaaaaaattgcttgatgtggatgtctgatatgtttttattgaaaaatagGTGCAAGGTATGATGGAAGAGGTGATATTTGATCACTTGCATGCAGCAGCATTCCAAGGCCATCCACTAGGGGACACAATATTAGGTCCTGAAGAAAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - -attgctg
- - - - - - - tttcatt
- - - - - - - - - - - - - - - - - -tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggatg