Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28985030|gb|BQ539276.2|BQ539276EST: CGTCGGAGACGAGACCGGCGTCATGGTATTCACCGCCCGCAACGACCAAG TTGATTTGCTAAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
genomic: CGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtat ... tcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
EST:
gi|16920763|gb|BM074818.1|BM074818EST: CGTCGGAGACGAGACCGGCGTCATCGTATTCGCCGCCCGCAACGACCAAG TTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
genomic: CGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtat ... tcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
EST:
gi|18164703|gb|BM334542.1|BM334542EST: AGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAG TTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
genomic: AGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtat ... tcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
EST:
gi|18166081|gb|BM335920.1|BM335920EST: CGCCCGCAACGACCAAG TTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
genomic: CGCCCGCAACGACCAAGgtgtgtgtat ... tcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
EST:
gi|16920777|gb|BM074825.1|BM074825EST: CGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAG TTGATTTGCTAAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
genomic: CGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtat ... tcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
EST:
gi|18163409|gb|BM333248.1|BM333248EST: CGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAG TTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
genomic: CGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtat ... tcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gattttttcttttggataactttcagtccgtgtgatgtgctatcctcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCGACATGTTCAAAGGATCAATGAGGCTTGCAGTGGACAAATGGGGGCGGAT
ggataac putative branch site (score: 3)
tgctatcctccttt putative PPT
tttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgttttcatggttgctatcatgttcaactaattgttctgactgtgattttttcttttggataactttcagtccgtgtgatgtgctatcctcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCGACATGTTCAAAGGATCAATGAGGCTTGCAGTGGACAAATGGGGGCGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA