1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaagctccggatcgcctctagcctgcgtgatgtgtgcgcggagcggatttttgattcgtttcgtttttttttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTGCCTTCGCAGCACG
species | Zea mays |
transcript | GRMZM5G824405_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC CTGCCTTTGGAGCGGGCGGCCACCGCNGTGTGGGAGTTCAGCTGCGTCGTGEST: gi|211452890|gb|FK979205.1|FK979205
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC CTGCCTTTGGAGCGGGCGGCCACCG-CGTGTGGGAGTTCAGCTGCGTCGTGEST: gi|211452892|gb|FK979207.1|FK979207
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTGEST: gi|211455013|gb|FK979215.1|FK979215
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTGEST: gi|211452887|gb|FK979202.1|FK979202
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTGEST: gi|211452889|gb|FK979204.1|FK979204
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTGEST: gi|211455010|gb|FK979212.1|FK979212
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTGEST: gi|211455012|gb|FK979214.1|FK979214
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTGEST: gi|211452886|gb|FK979201.1|FK979201
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTGEST: gi|211455009|gb|FK979211.1|FK979211
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTGEST: gi|211452891|gb|FK979206.1|FK979206
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: ACCTCTTCGGCTCCCACCCTGT-GCTGGCTCGTGGGACCCCTGCAA-GCC CTGCCTTTGGAGCGGGCGGCCACCG-CGTGTGGGAGTTCAGCTGCGTCGTGEST: gi|211455008|gb|FK979210.1|FK979210
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
cgtgatgtgtgcgcggagcggatttttgattcgtttcgtttttttttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTGCCTTCGCAGCACG
ttttgat putative branch site (score: 4)
tttttgattcgtttcg CT-rich tract
tttcgttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctccggatcgcctctagcctgcgtgatgtgtgcgcggagcggatttttgattcgtttcgtttttttttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTGCCTTCGCAGCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC