Sequence
atgc intronic sequence ATGC exonic sequencegtaagcttcaaagagttccgaaaatgatgaactgaaaatttgtttttggggacaagcttttgaatagaccatactaggccttttcccttcagaagcttctgtcagatgttgtgcctggatcttatgcataaatagtgcctgcatttatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCATCATTGGAGACGACTCCTCTGTATTTGTGGAGACAGATCGTACATCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G823716_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g03480.1 (Oryza sativa), 3'ss of exon 1
gtaagcttcaaagagttccgaaaatgatgaactgaaaatttgtttttggggacaagcttttgaatagaccatactaggccttttcccttcagaagcttctgtcagatgttgtgcctggatcttatgcataaatagtgcctgcatttatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCATCATTGGAGACGACTCCTCTGTATTTGTGGAGACAGATCGTACATCATG------
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-----------------------------------------------gtatagcaatgttgaataagaaaacattttcccccctcaataaataaataaataataatatttggagtttaacttta-actgattttttgtctaatttcttgctttagGTTTTGAAGCTGGAGCC------AACACATCAAACATTGACCCATGGTCCATCATTGGAGATGAATCCTCTGTTCACGTGACAACTGATCGCTCATCCTGTTTCAG
upper sequence: GRMZM5G823716_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g03734.1 (Oryza sativa), 3'ss of exon 1
gtaagcttcaaagagttccgaaaatgatgaactgaaaatttgtttttggggacaagcttttgaatagaccatactaggccttt-tcccttcagaagcttctgtcagatgttgtgcctggatcttatgcataaatagtgcctgcatttatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCATCATTGGAGACGACTCCTCTGTATTTGTGGAGACAGATCGTACATCATG------
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---------------------------------------------gtatagcaatgttgaataagaaaacattttccccctcaataaataaataaataaataataatatttgaagtttaacttta-actgaacttttgtctaatttcttgctttagGTTTTGAAGCTGGAGCC------AACACATCAAACATTGACCCATGGTCCATCATTGGAGATGAATCCTCTGTGCACGTCACAACTGATCGCTCATCCTGTTTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcagatgttgtgcctggatcttatgcataaatagtgcctgcatttatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCATCATTGGAGACGACTCCTCTGTATTTGTGGAGACAGATCGTACATCATG
ataaatagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcttcaaagagttccgaaaatgatgaactgaaaatttgtttttggggacaagcttttgaatagaccatactaggccttttcccttcagaagcttctgtcagatgttgtgcctggatcttatgcataaatagtgcctgcatttatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCATCATTGGAGACGACTCCTCTGTATTTGTGGAGACAGATCGTACATCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA