1 5' 3' | 2 5' 3' | 3 5' 3' |
...accttcaaattgctttggatttgacagtccttcgaaaagttctattagattgtcacatttatattgatttgcctatttcacaactctttactctcggcagGTGGTTAGTAACCCAGAGAAGACACCACTTCACACCTTTTTCTGTACCTATGATTTGAGTGACATGCCTGCTGGAACCAAG
species | Zea mays |
transcript | GRMZM5G822842_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTCAACAAATAGCCGATTACGCATTCCCGTGAAAGGCCGCATACAACTG GTGGTTAGTAACCCAGAGAAGACACCACTTCACACCTTTTTCTGTACCTAT
genomic: GGTCAACAAATAGCCGATTACGCATTCCCGTGAAAGGCCGCATACAACTGgtactgaatt ... ctctcggcagGTGGTTAGTAACCCAGAGAAGACACCACTTCACACCTTTTTCTGTACCTAT
tagattgtcacatttatattgatttgcctatttcacaactctttactctcggcagGTGGTTAGTAACCCAGAGAAGACACCACTTCACACCTTTTTCTGTACCTATGATTTGAGTGACATGCCTGCTGGAACCAAG
tattgat putative branch site (score: 26)
ctctttactctc putative PPT
acatttatattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accttcaaattgctttggatttgacagtccttcgaaaagttctattagattgtcacatttatattgatttgcctatttcacaactctttactctcggcagGTGGTTAGTAACCCAGAGAAGACACCACTTCACACCTTTTTCTGTACCTATGATTTGAGTGACATGCCTGCTGGAACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
accttca
- - - - - tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg