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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctattttttaatgatcaactatttgtcttgtcaaatgaaaattgaccaacctgcttatgtgacttatttcatgaatataattagatatttgtctttcagTTCAGATTGGCTTATGTTGCACCAGAGTCACGAGTGGTGGGAGCTGGAGACTTGGTTGATGAGCCAAAAAAAGTTGCTATCCATTATCTTCGTGGTTACT

Basic information

species Zea mays
transcript GRMZM5G822817_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G822817_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g53340.1 (Oryza sativa), 3'ss of exon 5
tctattttttaatgatcaactatttgt-cttgtcaaatgaaaatt--gaccaacctgcttatgtgacttatttcatgaatataattagatatttgtctttcagTTCAGATTGGCTTATGTTGCACCAGAGTCACGAGTGGTGGGAGCTGGAGACTTGGTTGATGAGCCAAAAAAAGTTGCTATCCATTATCTTCGTGGTTACT
  | | ||||| |   || |||||||| | |||| | |   ||     |  || |   ||||   |||| |  |     |||  || |  |||| |||||||||||||| |||||||||| || ||||| || ||||| |||||||||||||| || || || |||||||| ||| ||||| ||| |||||||||||| || |
-ttttattttattttgcatctatttgttcctgtccagttttaaccccaagaaaacatattat-caacttttgaccgttttattttttg-catttctctttcagTTCAGACTGGCTTATGTAGCTCCAGAATCGCGAGTAGTGGGAGCTGGAGATTTAGTAGACGAGCCAAAGAAAATTGCTGTCCGTTATCTTCGTGGATATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accaacctgcttatgtgacttatttcatgaatataattagatatttgtctttcagTTCAGATTGGCTTATGTTGCACCAGAGTCACGAGTGGTGGGAGCTGGAGACTTGGTTGATGAGCCAAAAAAAGTTGCTATCCATTATCTTCGTGGTTACT
 aattgac  putative branch site (score: 3)
                                           tttgtctttc  putative PPT
                 acttatttcatgaata  TA-rich tract