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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaaggcccgcagctctcctttccttttttttcttttcttctttccccccacctgttcgatcgagccagtgcgtgatggatgatgggtgatggtctctcgccgccgcgctctccttcctcctcctgctgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGTGCCGCGGGACCTCCGCCTGGTTGAGGCCTTCGGCTACACGCTCGGCGGC

Basic information

species Zea mays
transcript GRMZM5G822098_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G822098_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os10g35644.3 (Oryza sativa), 3'ss of exon 1
gcaaggcccgcagctctcctttccttttttttcttttcttctttccccccacctgttcgatcgagccagtgcgtgatggatgatgggtgatggtctctcgccgccgcgctctccttcctcctcctgctgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGTGCCGCGGGACCTCCGCCTGGTTGAGGCCTTCGGCTACACGCTCGGCGGC
                       |     | ||| |    |  || |  |  | ||| ||| ||  |      |||||| ||  |||  ||||   ||                                |  |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||  |||| |||||||| || ||||||||||||||||| |||||||||
------------------gcaagcaaggctctctctatcgcgatctcatcctccgtttgattgattcttgatttgatggttgg-gggcaatggcaact--------------------------------atggcagGGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGTGCCCAGGGAGCTCCGCCTCGTGGAGGCCTTCGGCTACACCCTCGGCGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211326786|gb|FL341537.1|FL341537
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|148990367|gb|EE031933.2|EE031933
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|94472889|gb|EB701847.1|EB701847
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|37422903|gb|CF649167.1|CF649167
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAACGCGTCCACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|211409814|gb|FL346481.1|FL346481
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|78116852|gb|DV535239.1|DV535239
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|101391075|gb|EB817471.1|EB817471
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|76292228|gb|DV031796.1|DV031796
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|211170193|gb|FL324191.1|FL324191
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgggtgatggtctctcgccgccgcgctctccttcctcctcctgctgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGTGCCGCGGGACCTCCGCCTGGTTGAGGCCTTCGGCTACACGCTCGGCGGC
           tctctcgccgccgcgc  CT-rich tract