Sequence
atgc intronic sequence ATGC exonic sequence...gaactgactacattttagttatttcttgtagttgagattcatcatgttgtacttttcctttgctaagataagattactgatatatttaatttctctccagCACTTTGTTTTGGAAGAGAACATGTTGGAGGTTGACTGCCCCTGTGTGACGCCTGAGGTTGTCTTGAAGGCATCAGGCCATGTTGAGAAGTTTACTGACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G821551_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g42560.1 (Oryza sativa), 3'ss of exon 1
gaactgactacattttagttatttcttgtagttga-gattcatcatgttgtacttttcctttgctaaga--taagatt------actgatatatttaatttctctccagCACTTTGTTTTGGAAGAGAACATGTTGGAGGTTGACTGCCCCTGTGTGACGCCTGAGGTTGTCTTGAAGGCATCAGGCCATGTTGAGAAGTTTACTGACC
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--------tatgtttgaaattgcttgtgtatttgataactttttattttg-attttacttatgttgggtactaagattttagtcaccaaattcattcttttcttttcagCACTTCGTTTTGGAGGAGAACATGTTGGAGGTTGACTGCCCCTGTGTGACGCCTGAGGTTGTGTTGAAGGCATCGGGGCATGTCGAGAAGTTTACTGACC
upper sequence: GRMZM5G821551_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv01s0150g00150.t01 (Vitis vinifera), 3'ss of exon 1
---gaactgactacattttagttatttcttgtagttgag-attcatcatgttgtacttttcctttgctaagataagattactgatatatttaatt-tctctccagCACTTTGTTTTGGAAGAGAACATGTTGGAGGTTGACTGCCCCTGTGTGACGCCTGAGGTTGTCTTGAAGGCATCAGGCCATGTTGAGAAGTTTACTGACC
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tgcacatttatacgaatgctggcatatgtagtgcatgaatatataaaattcaatacaattcctttg--aatgta---ttgttgatccactctattcttttttcagCATTTTGTTCTTGAGGAGAACATGTTGGAAGTTGACTGCCCTTGTGTAACGCCTGAAGTTGTTCTGAAGGCTTCAGGGCATGTTGATAAATTTACCGACC
upper sequence: GRMZM5G821551_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv17s0000g00160.t01 (Vitis vinifera), 3'ss of exon 1
gaactgactacattttagttatttctt--gtagttgagattcatcatgttgtacttttcctttgctaagataagattactgatatatttaatttctctccagCACTTTGTTTTGGAAGAGAACATGTTGGAGGTTGACTGCCCCTGTGTGACGCCTGAGGTTGTCTTGAAGGCATCAGGCCATGTTGAGAAGTTTACTGACC
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taaagctcta-gttatcgtgaatttttaagtgcgcgtgagcatgcacatgggagtctctgtgcattttt-tgtaactgatcccctcttttatattgtttcagCATTTTGTTCTGGAGGAGAATATGTTGGAAGTTGATTGCCCATGTGTGACACCAGAAATTGTATTGAAGGCATCGGGTCATGTTGATAAGTTCACTGATCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30031893|gb|CB833744.1|CB833744EST: GGCCGCCCGGGTGCCGCGTTAAGGCCAACGTGCTTTCCTTCTGGCGTCAG CACTTTGTTTTGGAAGAGAACATGTTGGAGGTTGACTGCCCCTGTGTGACG
genomic: GGCCGCCCGGGTGCCGCGTTAAGGCCAACGTGCTTTCCTTCTGGCGTCAGgtgatgcccg ... ttctctccagCACTTTGTTTTGGAAGAGAACATGTTGGAGGTTGACTGCCCCTGTGTGACG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgtacttttcctttgctaagataagattactgatatatttaatttctctccagCACTTTGTTTTGGAAGAGAACATGTTGGAGGTTGACTGCCCCTGTGTGACGCCTGAGGTTGTCTTGAAGGCATCAGGCCATGTTGAGAAGTTTACTGACC
tttaatttctctcc CT-rich tract
taagataagattactg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaactgactacattttagttatttcttgtagttgagattcatcatgttgtacttttcctttgctaagataagattactgatatatttaatttctctccagCACTTTGTTTTGGAAGAGAACATGTTGGAGGTTGACTGCCCCTGTGTGACGCCTGAGGTTGTCTTGAAGGCATCAGGCCATGTTGAGAAGTTTACTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT