1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttggtcaattgtatactgtttatgttcattcttgtttccaaagatggaatattatcttccagcctatcatttatttgatttctgcttttgcaatctctagGTGACTGCAACCCCAGATTTAATGCTAGGGTATTTAGATTTCTTCCTTGGGGGAGATGAAAAGAGGCCTGATCTTCCACCTCGTCTTCGTCAAAGGTTTC
species | Zea mays |
transcript | GRMZM5G820781_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCATGCTTACGGTCTTGCCGTTCACGTGCACTCTATGAAGGCCTCAAG GTGACTGCAACCCCAGATTTAATGCTAGGGTATTTAGATTTCTTCCTTGGG
genomic: ATTCATGCTTACGGTCTTGCCGTTCACGTGCACTCTATGAAGGCCTCAAGgttgacttgg ... caatctctagGTGACTGCAACCCCAGATTTAATGCTAGGGTATTTAGATTTCTTCCTTGGG
ggaatattatcttccagcctatcatttatttgatttctgcttttgcaatctctagGTGACTGCAACCCCAGATTTAATGCTAGGGTATTTAGATTTCTTCCTTGGGGGAGATGAAAAGAGGCCTGATCTTCCACCTCGTCTTCGTCAAAGGTTTC
atttgat putative branch site (score: 69)
cttttgc putative PPT
tatcatttatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtcaattgtatactgtttatgttcattcttgtttccaaagatggaatattatcttccagcctatcatttatttgatttctgcttttgcaatctctagGTGACTGCAACCCCAGATTTAATGCTAGGGTATTTAGATTTCTTCCTTGGGGGAGATGAAAAGAGGCCTGATCTTCCACCTCGTCTTCGTCAAAGGTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - actgttt
- - - - - - - - - - - - - -attcttg