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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtccgttcgtcccaccctcgtcgctcgagttagagatttattattatatcaatcggttgtgaaacagataaatctaacgctcacttcgcgatctctactagTTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAG

Basic information

species Zea mays
transcript GRMZM5G819212_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211290851|gb|FL314522.1|FL314522
EST:     CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAG                         TTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
genomic: CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAGgtgagtccgt ... tctctactagTTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
EST: gi|211269504|gb|FL311290.1|FL311290
EST:     CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAG                         TTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
genomic: CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAGgtgagtccgt ... tctctactagTTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
EST: gi|211390914|gb|FL318343.1|FL318343
EST:     CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAG                         TTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
genomic: CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAGgtgagtccgt ... tctctactagTTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
EST: gi|211135169|gb|FL439581.1|FL439581
EST:     CTCCTCCCTCGTGCCTGTTTC-GSTGCGCGGCCTCTCTCCGGAAGCACAG                         TTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
genomic: CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAGgtgagtccgt ... tctctactagTTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
EST: gi|211286457|gb|FL309059.1|FL309059
EST:     CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAG                         TTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
genomic: CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAGgtgagtccgt ... tctctactagTTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
EST: gi|6918525|gb|AW400055.1|AW400055
EST:     CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAG                         TTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGNTCCGGCATGGCGAC
genomic: CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAGgtgagtccgt ... tctctactagTTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
EST: gi|33467473|gb|CF244522.1|CF244522
EST:     CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAG                         TTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
genomic: CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAGgtgagtccgt ... tctctactagTTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
EST: gi|211336107|gb|FL367026.1|FL367026
EST:     CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAG                         TTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
genomic: CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAGgtgagtccgt ... tctctactagTTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
EST: gi|37381402|gb|CF627583.1|CF627583
EST:     CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAG                         TTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC
genomic: CTCCTCCCTCGTGCCTGTTTCGGCTGCGCGGCCTCTCTCCGGAAGCACAGgtgagtccgt ... tctctactagTTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcaatcggttgtgaaacagataaatctaacgctcacttcgcgatctctactagTTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAG
                                             tctctact  CT-rich tract
                     ataaatctaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtccgttcgtcccaccctcgtcgctcgagttagagatttattattatatcaatcggttgtgaaacagataaatctaacgctcacttcgcgatctctactagTTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA