Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctccctgcctccttccaacctcgcttgctggtcgtatcctatgtgtcctctaacgagggtctgtttgttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACACCCGCCTCTCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATC

Basic information

species Zea mays
transcript GRMZM5G817037_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G817037_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 3'ss of exon 1
------------gtaggctccctgcctccttccaacctcgcttgctggtcgtatcctatgtgtcctc----taacgagggtctgtttgttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACACCCGCCTCTCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATC
                | |||| |||  |  ||    |  | | | | ||           | || |    |   |  ||| ||| ||| | |||||||| |||||||||||||||||||| || ||||| || || || || || |||||||| || || |||||||  ||||||||||| || ||||||||||||
gtaagcccccatactcgatccccgcccgccgccgtggtttcctccggctctcgctgacgacggccgcgggttgttgttggtgtgtgtgtgcctgcagGACGTGCGTGGCCATCGCCGGCGCGGACTACTGCGTGGTGGCCGCCGATACCCGCCTTTCCGTCGGATACAACATCCTCACGCGCGACCACTCCAAGATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78118564|gb|DV536948.1|DV536948
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211289621|gb|FL244434.1|FL244434
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211149992|gb|FL260584.1|FL260584
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|71433501|gb|DR814551.1|DR814551
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211287471|gb|FL244413.1|FL244413
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211291759|gb|FL244447.1|FL244447
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211291754|gb|FL244442.1|FL244442
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211289620|gb|FL244433.1|FL244433
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211291758|gb|FL244446.1|FL244446
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211287474|gb|FL244416.1|FL244416
EST:     CCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACA
genomic: CCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAAC-AACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACA
EST: gi|211302464|gb|FL244526.1|FL244526
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211289613|gb|FL244426.1|FL244426
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211402444|gb|FL244547.1|FL244547
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGTTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211291762|gb|FL244450.1|FL244450
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|148953910|gb|EC899291.2|EC899291
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211396164|gb|FL318371.1|FL318371
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211399899|gb|FL244535.1|FL244535
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211287479|gb|FL244421.1|FL244421
EST:     CCATCGCCATGTGCGAGGCGCGSCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: CCATCGCCATGT-CGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211399902|gb|FL244538.1|FL244538
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211296046|gb|FL244480.1|FL244480
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211302455|gb|FL244517.1|FL244517
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211287475|gb|FL244417.1|FL244417
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211300324|gb|FL244509.1|FL244509
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211291764|gb|FL244452.1|FL244452
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCCGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211296047|gb|FL244481.1|FL244481
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211302462|gb|FL244524.1|FL244524
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211293897|gb|FL244457.1|FL244457
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211399903|gb|FL244539.1|FL244539
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|85152368|gb|DW587710.1|DW587710
EST:     ACCATCGCCATGTCGAGGCGCGGCGTCTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGATAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|33942254|gb|CF348854.1|CF348854
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGATAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211399907|gb|FL244543.1|FL244543
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGAMAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211287480|gb|FL244422.1|FL244422
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211296040|gb|FL244474.1|FL244474
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211289617|gb|FL244430.1|FL244430
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211302461|gb|FL244523.1|FL244523
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211296041|gb|FL244475.1|FL244475
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|116817176|gb|EC859993.1|EC859993
EST:     ACCATCGCCATGTCGAAGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211289618|gb|FL244431.1|FL244431
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211289627|gb|FL244440.1|FL244440
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211300320|gb|FL244505.1|FL244505
EST:     ACCATCGCCATGTCGAGGCGCGGCGACKGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211293905|gb|FL244465.1|FL244465
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211399897|gb|FL244533.1|FL244533
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACYGKGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211296049|gb|FL244483.1|FL244483
EST:     ACCATCGCCATGTCGAGGCGCGGCGACKGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211302456|gb|FL244518.1|FL244518
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211399904|gb|FL244540.1|FL244540
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|149105265|gb|EE290755.2|EE290755
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211293898|gb|FL244458.1|FL244458
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211289626|gb|FL244439.1|FL244439
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGKGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211296048|gb|FL244482.1|FL244482
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGARAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|148930814|gb|EC873185.2|EC873185
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211291763|gb|FL244451.1|FL244451
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|91868767|gb|EB400150.1|EB400150
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211300330|gb|FL244515.1|FL244515
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211298177|gb|FL244489.1|FL244489
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211300321|gb|FL244506.1|FL244506
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACA
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATC-GCCGGCGCTGATTACTGTGTCGTCGCTGCGGACA
EST: gi|211296045|gb|FL244479.1|FL244479
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|71316983|gb|DR795175.1|DR795175
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211291765|gb|FL244453.1|FL244453
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211300317|gb|FL244502.1|FL244502
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|148965093|gb|EE015910.2|EE015910
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211298175|gb|FL244487.1|FL244487
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211289616|gb|FL244429.1|FL244429
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211296050|gb|FL244484.1|FL244484
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGSGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGWGTCRGTCGCTGCGGACA
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTC-GTCGCTGCGGACA
EST: gi|211298184|gb|FL244496.1|FL244496
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211289614|gb|FL244427.1|FL244427
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|31356308|gb|CD440665.1|CD440665
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
EST: gi|211302468|gb|FL244530.1|FL244530
EST:     ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC
genomic: ACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 304

CCGACTCCGGTGACTCCACCACCAGCAACCCGTGCAGCGAGCGCACTCCGACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACACCCGCCTCTCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 483

CCGACTCCGGTGACTCCACCACCAGCAACCCGTGCAGCGAGCGCACTCCGACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACACCCGCCTCTCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 509

CCGACTCCGGTGACTCCACCACCAGCAACCCGTGCAGCGAGCGCACTCCGACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACACCCGCCTCTCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 337

CCGACTCCGGTGACTCCACCACCAGCAACCCGTGCAGCGAGCGCACTCCGACCATCGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaggctccc ... gttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACACCCGCCTCTCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcttgctggtcgtatcctatgtgtcctctaacgagggtctgtttgttcttgcagGACCTGCGTGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACACCCGCCTCTCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATC
                          ctctaac  putative branch site (score: 337)
                                          tttgttctt  putative PPT