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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggctagaatacagggattttatggttatatttctccctgctgaaatattacaccatttacatgaactcaagaataaccactgttatatttttcttgtcagAAAAAAGTGTTGCTCCTACGACTAGTTCTTTTTATGTGTAACCTTCAATGAAGGATTCTCAG

Basic information

species Zea mays
transcript GRMZM5G816784_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149000463|gb|EE037638.2|EE037638
EST:     GCATTTCGCTAGGCGCCACACGGCCCTTGGCC-G-G-CGAGCACCCACAG                         AAAAAAGTGTTGCTCCTACGACTAGTTCTTTTTATGTGTAACCTTCAATGA
genomic: GCATTTCGCTAGGCGCCACACGGCCCTTGGCCGGCGACGAGCACCCACAGgtatgcccac ... ttcttgtcagAAAAAAGTGTTGCTCCTACGACTAGTTCTTTTTATGTGTAACCTTCAATGA
EST: gi|211440032|gb|FK972557.1|FK972557
EST:     GCATTTCGCTAGGCGCCACACGGCCCTTGGCCGGCGACGAGCACCCACAG                         -AAAAAGTGTTGCTCCTACGACTAGTTCTTTTTATGTGTAACCTTCAATGA
genomic: GCATTTCGCTAGGCGCCACACGGCCCTTGGCCGGCGACGAGCACCCACAGgtatgcccac ... ttcttgtcagAAAAAAGTGTTGCTCCTACGACTAGTTCTTTTTATGTGTAACCTTCAATGA
EST: gi|74236845|gb|DT644759.1|DT644759
EST:     GCATTTCGCTAGGCGCCACACGGCCCTTGGCCGGCGACGAGCACCCACAG                         AAAAAAGTGTTGCTCCTACGACTAGTTCTTTTTATGTGTAACCTTCAATGA
genomic: GCATTTCGCTAGGCGCCACACGGCCCTTGGCCGGCGACGAGCACCCACAGgtatgcccac ... ttcttgtcagAAAAAAGTGTTGCTCCTACGACTAGTTCTTTTTATGTGTAACCTTCAATGA
EST: gi|211440029|gb|FK972554.1|FK972554
EST:     GCATTTCGCTAGGCGCCACACGGCCCTTGGCCCG-GACGAGCACCCACAG                         -AAAAAGTGTTGCTCCTACGACTAGTTCTTTTTATGTGTAACCTTCAATGA
genomic: GCATTTCGCTAGGCGCCACACGGCCCTTGGCCGGCGACGAGCACCCACAGgtatgcccac ... ttcttgtcagAAAAAAGTGTTGCTCCTACGACTAGTTCTTTTTATGTGTAACCTTCAATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattacaccatttacatgaactcaagaataaccactgttatatttttcttgtcagAAAAAAGTGTTGCTCCTACGACTAGTTCTTTTTATGTGTAACCTTCAATGAAGGATTCTCAG
                         gaataac  putative branch site (score: 2)
                                          tttttcttgtc  putative PPT
                                   tgttatatttttctt  TA-rich tract