1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatgttctcccaacgcactattcgctagtgctatgagttgggtagtacaattggagtactttcatgagaataatgggctgcatttggtctgtgattacagAGAAGGAACGGTTTCATCCAGGGGAGGAGAAGGATGATGGGTGCCCGGCCTCGTCGAGCTGACAGGGAGGATAGTGTGCGGCGGACAGTCTATGTCTCTG
species | Zea mays |
transcript | GRMZM5G814159_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGATGGACTCCAGCAGCGACGGATCCGCCAATGGTCAGCCGAATCGACGG AGAAGGAACGGEST: gi|31909457|gb|CD650928.1|CD650928
genomic: GGATGGACTCCAGCAGCGACGGATCCGCCAATGGTCAGCCGAATCGACGGgtaatcgttg ... gtgattacagAGAAGGAACGG
EST: GGATGGACTCCAGCAGCGACGGATCCGCCAATGGTCAGCCGAATCGACGG AGAAGGAACGGTTTCATCCAGGGGAGGAGAAGGATGATGGGTGCCCGGCCTEST: gi|32914736|gb|CF019548.1|CF019548
genomic: GGATGGACTCCAGCAGCGACGGATCCGCCAATGGTCAGCCGAATCGACGGgtaatcgttg ... gtgattacagAGAAGGAACGGTTTCATCCAGGGGAGGAGAAGGATGATGGGTGCCCGGCCT
EST: GGTCAGCCGAATCGACGG AGAAGGAACGGTTTCATCCAGGGGAGGAGAAGGATGATGGGTGCCCGGCCT
genomic: GGTCAGCCGAATCGACGGgtaatcgttg ... gtgattacagAGAAGGAACGGTTTCATCCAGGGGAGGAGAAGGATGATGGGTGCCCGGCCT
tacaattggagtactttcatgagaataatgggctgcatttggtctgtgattacagAGAAGGAACGGTTTCATCCAGGGGAGGAGAAGGATGATGGGTGCCCGGCCTCGTCGAGCTGACAGGGAGGATAGTGTGCGGCGGACAGTCTATGTCTCTG
agaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgttctcccaacgcactattcgctagtgctatgagttgggtagtacaattggagtactttcatgagaataatgggctgcatttggtctgtgattacagAGAAGGAACGGTTTCATCCAGGGGAGGAGAAGGATGATGGGTGCCCGGCCTCGTCGAGCTGACAGGGAGGATAGTGTGCGGCGGACAGTCTATGTCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcat