Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttctctcatttttttttctgttcttctttttggcttggtgtggtcagtgccgctgaaatagctgctaaaaggtgactactttttcttcttcttccccagGATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGAGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACT

Basic information

species Zea mays
transcript GRMZM5G813363_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G813363_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g10740.1 (Oryza sativa), 3'ss of exon 1
gttctctcatttttttttctgttcttctttttggcttggtgtgg--tcagtgccgctgaaatagctgctaaaaggtgactactttttcttcttcttccccagGATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGAGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACT
||   ||  ||  |||    ||  |||||      |  | || |  ||| | ||   |   |      |   | |||| ||    | | |  | ||| |||||| ||||  |||||||||||||| |||||  || |||| ||  | |||||||||||||||||||| ||||| || |||||||||||  | ||  ||||| 
gtatactgtttaatttgctcgtaattcttcagacttatgcgttgtttcacttccaa-gccgttctcatttcgaagtgattatcactgcatgat-ttctccagGAGCATCAAGTGAGGACGAGATGCGGTTCATTATCCGTCGCGATATACGGAGACGAGGACAAGCCGGCGCTCATCACGTACCCGGACATCGCGTTGAACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91872830|gb|EB402787.1|EB402787
EST:     GCTCCGGTTCCGTGTCGGTGGACGTCGAGCGGATCTCCTTCGGCGGCAAG                         GATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGA
genomic: GCTCCGGTTCCGTGTCGGTGGACGTCGAGCGGATCTCCTTCGGCGGCAAGgtccgacgac ... tcttccccagGATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGA
EST: gi|101391594|gb|EB817733.1|EB817733
EST:     GCTCCGGTTCCGTGTCGGTGGACGTCGAGCGGATCTCCTTCGGCGGCAAG                         GATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGA
genomic: GCTCCGGTTCCGTGTCGGTGGACGTCGAGCGGATCTCCTTCGGCGGCAAGgtccgacgac ... tcttccccagGATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGA
EST: gi|101387839|gb|EB815934.1|EB815934
EST:     GCTCCGGTTCCGTGTCGGTGGACGTCGAGCGGATCTCCTTCGGCGGCAAG                         GATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGA
genomic: GCTCCGGTTCCGTGTCGGTGGACGTCGAGCGGATCTCCTTCGGCGGCAAGgtccgacgac ... tcttccccagGATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGA
EST: gi|71322272|gb|DR797821.1|DR797821
EST:     GCTCCGGTTCCGTGTCGGTGGACGTCGAGCGGATCTCCTTCGGCGGCAAG                         GATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGA
genomic: GCTCCGGTTCCGTGTCGGTGGACGTCGAGCGGATCTCCTTCGGCGGCAAGgtccgacgac ... tcttccccagGATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGA
EST: gi|91047989|gb|EB158407.1|EB158407
EST:     GCTCCGGTTCCGTGTCGGTGGACGTCGAGCGGATCTCCTTCGGCGGCAAG                         GATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGA
genomic: GCTCCGGTTCCGTGTCGGTGGACGTCGAGCGGATCTCCTTCGGCGGCAAGgtccgacgac ... tcttccccagGATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGA
EST: gi|88749046|gb|DY533187.1|DY533187
EST:     GCTCCGGTTCCGTGTCGGTGGACGTCGAGCGGATCTCCTTCGGCGGCAAG                         GATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGA
genomic: GCTCCGGTTCCGTGTCGGTGGACGTCGAGCGGATCTCCTTCGGCGGCAAGgtccgacgac ... tcttccccagGATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtgccgctgaaatagctgctaaaaggtgactactttttcttcttcttccccagGATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGAGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACT
                  tgctaaa  putative branch site (score: 2)
                            tgactactttttcttc  putative PPT
                                tacttttt  TA-rich tract