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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctccgcacccctactcctttccacctccgctcccgctagaaaccttgcgaatcttctctaaacgccgttatcttcgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC

Basic information

species Zea mays
transcript GRMZM5G812553_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G812553_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g03400.2 (Oryza sativa), 3'ss of exon 1
gtacgctccgcacccctactcctttccacctccgctcccgctagaaaccttgcgaatcttctctaaacgccgttatcttcgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC
     |||| | | ||| | ||   | |||    | |||       | | |  |     ||||  |||||| ||  | |||   |||||||||||||||||||||||| || |||||||||||| |||| ||||  |||||||||||| |||||||||| ||| | 
--gtactcccccctcctccaccccgctacccttaccccct------atcctatgcgcgctctc--aacgcccttcacgtcgt--cgcagGCGCCAATGGCCGCACGGGCAACCAGTGGAAGCAGCTGCTCCCGCACCTCCGCACCCGCTTCGCTGACCAATGCGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075654|gb|DV504088.1|DV504088
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|40334416|gb|CK368486.1|CK368486
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|50336722|gb|CO531848.1|CO531848
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|71764065|gb|DR962002.1|DR962002
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|211467175|gb|FK976084.1|FK976084
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|91878207|gb|EB408164.1|EB408164
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|76285904|gb|DV025472.1|DV025472
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|89759547|gb|DY688342.1|DY688342
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|211469692|gb|FK976089.1|FK976089
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|211469691|gb|FK976088.1|FK976088
EST:     CGCCTCCCACCGCCGGCGC-RCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCCGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|30307231|gb|CD001904.1|CD001904
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|149080870|gb|EE169951.2|EE169951
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|211467172|gb|FK976081.1|FK976081
EST:     CGCCTCCCACCGCCGGCGC-GCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|211469695|gb|FK976092.1|FK976092
EST:     CGCCTCCCACCGCCGGCGC-GCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|93281461|gb|EB673725.1|EB673725
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|211469693|gb|FK976090.1|FK976090
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|76021472|gb|DT948642.1|DT948642
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|27522138|gb|CA989244.1|CA989244
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|148976019|gb|EE025878.2|EE025878
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|50322460|gb|CO517586.1|CO517586
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|30087318|gb|CB885526.1|CB885526
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|71774560|gb|DR972438.1|DR972438
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|91051589|gb|EB162007.1|EB162007
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|78085115|gb|DV513508.1|DV513508
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|78078210|gb|DV506625.1|DV506625
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|91878508|gb|EB408465.1|EB408465
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCCAGTGGAAGCAGTTGCTGCCGCTTCTC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGC-AGTGGAAGCAGTTGCTGCCGCTTCTC
EST: gi|78105462|gb|DV523880.1|DV523880
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|71436209|gb|DR817259.1|DR817259
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|67022745|gb|CO451494.1|CO451494
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|50339595|gb|CO534721.1|CO534721
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|91873291|gb|EB403248.1|EB403248
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|91050474|gb|EB160892.1|EB160892
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|78113487|gb|DV531878.1|DV531878
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|33467744|gb|CF244793.1|CF244793
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|211469689|gb|FK976086.1|FK976086
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|40335239|gb|CK369309.1|CK369309
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|78121935|gb|DV540319.1|DV540319
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|71298751|gb|DR785364.1|DR785364
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|211467171|gb|FK976080.1|FK976080
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|211467174|gb|FK976083.1|FK976083
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|211469696|gb|FK976093.1|FK976093
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|31363680|gb|CD448037.1|CD448037
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|71436272|gb|DR817322.1|DR817322
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|38687767|gb|CK144798.1|CK144798
EST:     CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGATTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
EST: gi|30087080|gb|CB885288.1|CB885288
EST:     CG-CTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGG                         GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC
genomic: CGCCTCCCACCGCCGGCGCGGCGATTTCGTTTTCGTCGTCAACCCCTTGGgtacgctccg ... cgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcccgctagaaaccttgcgaatcttctctaaacgccgttatcttcgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC
                          ctctaaa  putative branch site (score: 3)
                                      ttatcttc  putative PPT
                                      ttatctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgctccgcacccctactcctttccacctccgctcccgctagaaaccttgcgaatcttctctaaacgccgttatcttcgcggcgcagGCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC