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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gctcagctctatctccaactttttttcctttcctgacgtgaaactgggctgacttccctgggcgcgtccgtgcagGTCGGGATGGAGTTCTGGGCGCGTAGGCGCACCAGGCGCTATTGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGGCCGCGCGAGGGCCCATT

Basic information

species Zea mays
transcript GRMZM5G811220_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G811220_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g48880.1 (Oryza sativa), 3'ss of exon 2
------------------gctcagctctatctccaactttttttcctttcctgacgtg---aaactgggctgactt----ccctgggcgcgtccgtgcagGTCGGGATGGAGTTCTGGGCGC-GTAGGCGCACCAGGCGCTATTGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGGCCGCGCGAGGGCCCATT
                  ||  |   |    |    |  |  |  | | | ||   ||   ||| |  ||| | ||    | || |  | |    ||||||| ||||||||||||||||||| || ||||||||   |||| | |||||||||||||||||||||||||||||||||||||||  ||||||||||||| | 
gtaagcggccgtgacaccgcaaaatccctgtttgctcgctgataacgtccttgggatgtcaaaattttgcttaattttgacgctcgctggggggttgcagGTTGGGATGGAGTTCTGGGCGCAGTGGGCGCACCGCTCGCTGTGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGTGCGCGCGAGGGCCCGT-