1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gctttgtgtgcagtatatttcgtttcttctacaagcactattatctaaccacttttttttttttacttatttggactctattcgtttgttgctaaggaagGCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAG
species | Zea mays |
transcript | GRMZM5G809292_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTT GCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAGEST: gi|76281110|gb|DV020678.1|DV020678
genomic: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTTgtaagttgtc ... gctaaggaagGCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAG
EST: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTT GCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAGEST: gi|71766161|gb|DR964098.1|DR964098
genomic: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTTgtaagttgtc ... gctaaggaagGCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAG
EST: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTT GCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAGEST: gi|211491318|gb|FL191820.1|FL191820
genomic: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTTgtaagttgtc ... gctaaggaagGCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAG
EST: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTT GCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAGEST: gi|211491317|gb|FL191819.1|FL191819
genomic: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTTgtaagttgtc ... gctaaggaagGCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAG
EST: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTT GCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAGEST: gi|78087661|gb|DV516054.1|DV516054
genomic: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTTgtaagttgtc ... gctaaggaagGCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAG
EST: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTT ----ATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAGEST: gi|76916193|gb|DV166281.1|DV166281
genomic: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTTgtaagttgtc ... gctaaggaagGCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAG
EST: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTT GCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAGEST: gi|32865447|gb|CF005129.1|CF005129
genomic: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTTgtaagttgtc ... gctaaggaagGCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAG
EST: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTT GCAGATCATCAAAGAGAGGAGGGGTCGTTTTTGCTTCAGAAAACGTACAAGEST: gi|101398323|gb|EB821034.1|EB821034
genomic: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTTgtaagttgtc ... gctaaggaagGCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAG
EST: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTT GCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAG
genomic: CGGCCGTTGCCCACCGCCCCTTTGCTGGAACCACCATCCATTTCTTCCTTgtaagttgtc ... gctaaggaagGCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAG
taaccacttttttttttttacttatttggactctattcgtttgttgctaaggaagGCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAG
atctaac putative branch site (score: 23)
acttttttttttttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttgtgtgcagtatatttcgtttcttctacaagcactattatctaaccacttttttttttttacttatttggactctattcgtttgttgctaaggaagGCAGATCATCAAAGAGAGGATGGGTCGTTTTTGCTTCAGAAAACGTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - tgtgcag
- - - - - - - - - - - - - - - -caagcac