1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aggcagctcctaaaataccgaacttgtacgccttagaaagttactgaaattgcagctttggttgctcatccgaaaagggcctgaaccatatgcatatcagGTATGGGAAGTTTAGCCTTAACACAAGTCTAATTCTCCCACAAAAGATGGTGATGCAACTACGTAAGACATATATGATCAAATTGATCATGCCATCAAGC
species | Zea mays |
transcript | GRMZM5G808737_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAGACTCCGGAGGCCACGGGCGTTACATTCTCCTGCCGTATTTTTGCG GTATGGGAAGTTTAGCCTTAACACAAGTCTAATTCTCCCACAAAAGATGGTEST: gi|71446421|gb|DR827471.1|DR827471
genomic: GGAAGACTCCGGAGGCCACGGGCGTTACATTCTCCTGCCGTATTTTTGCGgtaattgcgc ... tgcatatcagGTATGGGAAGTTTAGCCTTAACACAAGTCTAATTCTCCCACAAAAGATGGT
EST: GGAAGACTCCGGAGGCCACGGGCGTTACATTCTCCTGCCGTATTTTTGCG GTATGGGAAGTTTAGCCTTAACACAAGTCTAATTCTCCCACAAAAGATGGT
genomic: GGAAGACTCCGGAGGCCACGGGCGTTACATTCTCCTGCCGTATTTTTGCGgtaattgcgc ... tgcatatcagGTATGGGAAGTTTAGCCTTAACACAAGTCTAATTCTCCCACAAAAGATGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggcagctcctaaaataccgaacttgtacgccttagaaagttactgaaattgcagctttggttgctcatccgaaaagggcctgaaccatatgcatatcagGTATGGGAAGTTTAGCCTTAACACAAGTCTAATTCTCCCACAAAAGATGGTGATGCAACTACGTAAGACATATATGATCAAATTGATCATGCCATCAAGC
- gcagctc
- - - - - - - - - - - - - - - - - - - - - - - - -ttgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcctgaa