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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctcaccctcacgctttcctcgctcgcttacagacgccggtctcaccgccgaatttagaatcgctcgattgacggttatcgtctacgtacgtcatcgcattgtgtgtagATGGAGCCCGCGGACCCTGATTTCTACCGGATAGGATATGCGCGGATGATGCGCGCCTATGGGATCGAGTTCCTCGAAGGCCCCGACGGGATGGGCGTCT

Basic information

species Zea mays
transcript GRMZM5G807767_T04
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G807767_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g50980.1 (Oryza sativa), 3'ss of exon 1
gtcctcaccctcacgctttcctcgctcgcttacagacgccggtctcaccgccgaatttagaatcgctcgattgacggttatcgtctacgtacgtcatcgcattgtgtgtagATGGAGCCCGCGGACCCTGATTTCTACCGGATAGGATATGCGCGGATGATGCGCGCCTATGGGATCGAGTTCCTCGAAGGCCCCGACGGGATGGGCGTCT
         ||||  || | | |||    || |   ||  | || || | |     ||    |||| ||  ||      ||     | | ||    |||  | ||||| |||||||||| || ||||| || |||||||||||||| || |||||||||||||| || || ||| | |||||| | ||||||||||| ||||||| |||||
------gtgctcaatctcttcccgcctagttgcttccgttgctcacatctc-----ttctgctcgcgcgcatg-----catgcatgatgaacaatgtcg--tcgtgtgcagATGGAGCCGGCCGACCCCGACTTCTACCGGATAGGGTACGCGCGGATGATGCGGGCGTACGGGGTTGAGTTCTTGGAAGGCCCCGATGGGATGGCCGTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagaatcgctcgattgacggttatcgtctacgtacgtcatcgcattgtgtgtagATGGAGCCCGCGGACCCTGATTTCTACCGGATAGGATATGCGCGGATGATGCGCGCCTATGGGATCGAGTTCCTCGAAGGCCCCGACGGGATGGGCGTCT
            gattgac  putative branch site (score: 3)