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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgattgcatccacgcgtcctacacttacacgtactgtgttcttcgtctgcggcagagcccgagacttgcattagttctcctgtaatctctctctgctactgctgtttccagATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCGCACTGAGCCCCAGCTTCAGGCAGTGCGCGACAGGGACGAAGCAGTCCCC

Basic information

species Zea mays
transcript GRMZM5G807267_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71309103|gb|DR790822.1|DR790822
EST:     GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTA                         ATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
genomic: GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTAgtacgtgatt ... ctgtttccagATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
EST: gi|89758326|gb|DY687544.1|DY687544
EST:     GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTA                         ATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
genomic: GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTAgtacgtgatt ... ctgtttccagATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
EST: gi|148933555|gb|EC877415.2|EC877415
EST:     GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTA                         ATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
genomic: GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTAgtacgtgatt ... ctgtttccagATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
EST: gi|74244873|gb|DT652787.1|DT652787
EST:     GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTA                         ATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
genomic: GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTAgtacgtgatt ... ctgtttccagATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
EST: gi|76288688|gb|DV028256.1|DV028256
EST:     GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTA                         ATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
genomic: GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTAgtacgtgatt ... ctgtttccagATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
EST: gi|50324602|gb|CO519728.1|CO519728
EST:     GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTA                         ATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
genomic: GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTAgtacgtgatt ... ctgtttccagATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
EST: gi|76014111|gb|DT941281.1|DT941281
EST:     GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTA                         ATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
genomic: GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTAgtacgtgatt ... ctgtttccagATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
EST: gi|71417345|gb|DR804018.1|DR804018
EST:     GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTA                         ATGGCGCCAAGTTCGGGTACTCCGGCTCCGTCGGTCCCGACCACTGGGGCG
genomic: GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTAgtacgtgatt ... ctgtttccagATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
EST: gi|211325088|gb|FL358834.1|FL358834
EST:     GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTA                         ATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
genomic: GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTAgtacgtgatt ... ctgtttccagATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
EST: gi|74239799|gb|DT647713.1|DT647713
EST:     GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTA                         ATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
genomic: GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTAgtacgtgatt ... ctgtttccagATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
EST: gi|71316204|gb|DR794778.1|DR794778
EST:     GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTA                         ATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG
genomic: GCTGCTGTGCTCTTTCTGCGCCGCCGCCGCCATTGCCTGCGACCCTCCTAgtacgtgatt ... ctgtttccagATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcccgagacttgcattagttctcctgtaatctctctctgctactgctgtttccagATGGCGCCAAGTTCGGGTACACCGGCTCCGTCGGTCCCGACCACTGGGGCGCACTGAGCCCCAGCTTCAGGCAGTGCGCGACAGGGACGAAGCAGTCCCC
                                             ctgtttcc  CT-rich tract
             attagtt  TA-rich tract