1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttggttctccttttattcacacttattgatctgaaagattatgttgtgttgcgacatgcaaacctggtgcaggcattgacaccatgttcctgtttatgtgtataccagAGAGAAACAGATCAAAGCCATTGAAGAATCCTTCAGAGCAGCCAAGTCAAGGCCTGTTCACCAGACTAAACGTGGCATGCAAGCTGAGTGGGTTATGCCT
species | Zea mays |
transcript | GRMZM5G806309_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAGAAACAAGGGAGGGNCGCAATGCTTTCCTAGACAATCTTAATGATAG AGAGAAACAGATCAAAGCCATTGAAGAATCCTTCAGAGCAGCCAAGTCAAGEST: gi|76286235|gb|DV025803.1|DV025803
genomic: CGAGAAACAAGGGAGGGTCGCAATGCTTTCCTAGACAATCTTAATGATAGgtttggttct ... tgtataccagAGAGAAACAGATCAAAGCCATTGAAGAATCCTTCAGAGCAGCCAAGTCAAG
EST: AACAAGGGAGGGTCGCAATGCTTTCCTAGACAATCTTAATGATAG AGAGAAACAGATCAAAGCCATTGAAGAATCCTTCAGAGCAGCCAAGTCAAGEST: gi|71765228|gb|DR963165.1|DR963165
genomic: AACAAGGGAGGGTCGCAATGCTTTCCTAGACAATCTTAATGATAGgtttggttct ... tgtataccagAGAGAAACAGATCAAAGCCATTGAAGAATCCTTCAGAGCAGCCAAGTCAAG
EST: AACAAGGGAGGGTCGCAATGCTTTCCTAGACAATCTTAATGATAG AGAGAAACAGATCAAAGCCATTGAAGAATCCTTCAGAGCAGCCAAGTCAAG
genomic: AACAAGGGAGGGTCGCAATGCTTTCCTAGACAATCTTAATGATAGgtttggttct ... tgtataccagAGAGAAACAGATCAAAGCCATTGAAGAATCCTTCAGAGCAGCCAAGTCAAG
acatgcaaacctggtgcaggcattgacaccatgttcctgtttatgtgtataccagAGAGAAACAGATCAAAGCCATTGAAGAATCCTTCAGAGCAGCCAAGTCAAGGCCTGTTCACCAGACTAAACGTGGCATGCAAGCTGAGTGGGTTATGCCT
cattgac putative branch site (score: 191)
tgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggttctccttttattcacacttattgatctgaaagattatgttgtgttgcgacatgcaaacctggtgcaggcattgacaccatgttcctgtttatgtgtataccagAGAGAAACAGATCAAAGCCATTGAAGAATCCTTCAGAGCAGCCAAGTCAAGGCCTGTTCACCAGACTAAACGTGGCATGCAAGCTGAGTGGGTTATGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA