1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctctcccgttgtcctctgcccatttttctggtttatgaattagttgcacttttagtgatatctaggacacttactgctgtcgacattgctcttctcgcagGACTATGTTCCGACGGTGTTTGACAACTTCAGTGCTAACGTTGTGGTTGATGGTAACACTGTCAACCTCGGCCTCTGGGACACTGCAG
species | Zea mays |
transcript | GRMZM5G803949_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGCAAGACCTGCATGCTCATTTCCTACACCTCCAACACCTTCCCCACC GACTATGTTCCGACGGTGTTTGACAACTTCAGTGCTAACGTTGTGGTTGATEST: gi|37392412|gb|CF633455.1|CF633455
genomic: TCGGCAAGACCTGCATGCTCATTTCCTACACCTCCAACACCTTCCCCACCgtacgcccct ... cttctcgcagGACTATGTTCCGACGGTGTTTGACAACTTCAGTGCTAACGTTGTGGTTGAT
EST: CACCTTCCCCACN GANTATGTTCCGACGGTGTTTGACAACTTCAGTGCTAACGTTGTGGTTGATEST: gi|211082361|gb|FK946337.1|FK946337
genomic: CACCTTCCCCACCgtacgcccct ... cttctcgcagGACTATGTTCCGACGGTGTTTGACAACTTCAGTGCTAACGTTGTGGTTGAT
EST: TCGGCAAGACCTGCATGCTCATTTCCTACACCTCCAACACCTTCCCCACC GACTATGTTCCGACGGTGTTTGACAACTTCAGTGCTAACGTTGTGGTTGAT
genomic: TCGGCAAGACCTGCATGCTCATTTCCTACACCTCCAACACCTTCCCCACCgtacgcccct ... cttctcgcagGACTATGTTCCGACGGTGTTTGACAACTTCAGTGCTAACGTTGTGGTTGAT
gcacttttagtgatatctaggacacttactgctgtcgacattgctcttctcgcagGACTATGTTCCGACGGTGTTTGACAACTTCAGTGCTAACGTTGTGGTTGATGGTAACACTGTCAACCTCGGCCTCTGGGACACTGCAG
cacttac putative branch site (score: 395)
ttgctcttctc putative PPT
atatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctcccgttgtcctctgcccatttttctggtttatgaattagttgcacttttagtgatatctaggacacttactgctgtcgacattgctcttctcgcagGACTATGTTCCGACGGTGTTTGACAACTTCAGTGCTAACGTTGTGGTTGATGGTAACACTGTCAACCTCGGCCTCTGGGACACTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG