1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccttcagtctggtacggtttgaggaagagttgatctcttctaatagatctctttgctgcttccctttctctgattctgcttgatctgtgtttttctgcagACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCC
species | Zea mays |
transcript | GRMZM5G800112_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGT ACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAEST: gi|211137002|gb|FL090161.1|FL090161
genomic: CGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGTgtaagtggtt ... ttttctgcagACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCA
EST: CGTCAACGCCGCGCGCCGCG-CGGTGCGGAGATCGATACCATGAAGAAGT ACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAEST: gi|15005220|gb|BI325287.1|BI325287
genomic: CGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGTgtaagtggtt ... ttttctgcagACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCA
EST: CGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGT ACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCEST: gi|211137930|gb|FL090167.1|FL090167
genomic: CGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGTgtaagtggtt ... ttttctgcagACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATC
EST: GTCAACGCCGCGCGCCGS-C-GGTTGCGAAGATCGATACCATGAAGAAGT ACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAEST: gi|211137007|gb|FL090166.1|FL090166
genomic: GTCAACGCCGCGCGCCGCGCCGGT-GCGGAGATCGATACCATGAAGAAGTgtaagtggtt ... ttttctgcagACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCA
EST: CGTCAACGCCGCGCGCCGSSC-GGTGCGAAGATCGATACCATGAAGAAGT ACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAEST: gi|101399867|gb|EB821780.1|EB821780
genomic: CGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGTgtaagtggtt ... ttttctgcagACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCA
EST: GATACCATGAAGAAGT ACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAEST: gi|211142486|gb|FL118083.1|FL118083
genomic: GATACCATGAAGAAGTgtaagtggtt ... ttttctgcagACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCA
EST: GTCAACGCCGCGCG-C-CGSCGGTTGCGGAGATCGATACCATGAAGAAGT ACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAEST: gi|211136052|gb|FL090147.1|FL090147
genomic: GTCAACGCCGCGCGCCGCGCCGG-TGCGGAGATCGATACCATGAAGAAGTgtaagtggtt ... ttttctgcagACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCA
EST: CGTCAACGCCGCGCGCCGCG-CGGTGCGGAGATCGATACCATGAAGAAGT ACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAEST: gi|15208834|gb|BI430718.1|BI430718
genomic: CGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGTgtaagtggtt ... ttttctgcagACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCA
EST: CGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGT ACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAEST: gi|22473062|gb|BU037542.1|BU037542
genomic: CGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGTgtaagtggtt ... ttttctgcagACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCA
EST: CGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGT ACAACGCTGGTACGAACAAGEST: gi|211137931|gb|FL090168.1|FL090168
genomic: CGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGTgtaagtggtt ... ttttctgcagACAACGCTGGTACGAACAAG
EST: CGTCAACGCCGCGCGCCGSSC-GGTGCGTAGATCGATACCATGAAGAAGT ACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGTgtaagtggtt ... ttttctgcagACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCA
gatctctttgctgcttccctttctctgattctgcttgatctgtgtttttctgcagACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCC
tgtttttct CT-rich tract
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttcagtctggtacggtttgaggaagagttgatctcttctaatagatctctttgctgcttccctttctctgattctgcttgatctgtgtttttctgcagACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCC
- - - - ctggtac