1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgccggtgctggccccacacttcctcgagcgtgctctgtgtcccctgattgaagactgggagtgtgccctctcttgtgcagGTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGGAAGCTGCTCCCGCGGGACCGCATCGACCGACTGCTCGACCCCGGCGCGT
species | Zea mays |
transcript | GRMZM2G702490_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCCGCCGTCGGCGGGTTGCTCTCCGACCTGCGCGCCCGCGTCTCCCAG GTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGGEST: gi|211131177|gb|FL293576.1|FL293576
genomic: CGGCCGCCGTCGGCGGGTTGCTCTCCGACCTGCGCGCCCGCGTCTCCCAGgtgccggtgc ... tcttgtgcagGTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGG
EST: CGGCCGCCGTCGGCGGGTTGCTCTCCGACCTGCGCGCCCGCGTCTCCCAG GTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGGEST: gi|211131173|gb|FL293572.1|FL293572
genomic: CGGCCGCCGTCGGCGGGTTGCTCTCCGACCTGCGCGCCCGCGTCTCCCAGgtgccggtgc ... tcttgtgcagGTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGG
EST: GGCCGCCGTCGGCGGGGTTGCTCTCCGACCTGCGCGCCCGCGTCTCCCAG GTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGGEST: gi|211125177|gb|FL001727.1|FL001727
genomic: GGCCGCCGTCGGCGGG-TTGCTCTCCGACCTGCGCGCCCGCGTCTCCCAGgtgccggtgc ... tcttgtgcagGTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGG
EST: CGGTCGCCGTCGGCGGGTTGCTCTCCGACCTGCGCGCCCGCGTCTCCCAG GTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGGEST: gi|149110095|gb|EE293910.2|EE293910
genomic: CGGCCGCCGTCGGCGGGTTGCTCTCCGACCTGCGCGCCCGCGTCTCCCAGgtgccggtgc ... tcttgtgcagGTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGG
EST: CGGCCGCCGTCGGCGGGTTGCTCTCCGACCTGCGCGCCCGCGTCTCCCAG GTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGGEST: gi|211131175|gb|FL293574.1|FL293574
genomic: CGGCCGCCGTCGGCGGGTTGCTCTCCGACCTGCGCGCCCGCGTCTCCCAGgtgccggtgc ... tcttgtgcagGTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGG
EST: CGGCCGCCGTCGGCGGGTTGCTCTCCGACCTGCGCGCCCGCGTCTCCCAG GTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGG
genomic: CGGCCGCCGTCGGCGGGTTGCTCTCCGACCTGCGCGCCCGCGTCTCCCAGgtgccggtgc ... tcttgtgcagGTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGG
gagcgtgctctgtgtcccctgattgaagactgggagtgtgccctctcttgtgcagGTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGGAAGCTGCTCCCGCGGGACCGCATCGACCGACTGCTCGACCCCGGCGCGT
ccctgat putative branch site (score: 8)
tgccctctctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccggtgctggccccacacttcctcgagcgtgctctgtgtcccctgattgaagactgggagtgtgccctctcttgtgcagGTGCTGCGCGGGGGAGGCGCCGAGGCGGTGAGGCGGAACGCGGCGCGGGGGAAGCTGCTCCCGCGGGACCGCATCGACCGACTGCTCGACCCCGGCGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT