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...attacatgatatgcctaatgtcatcattatttacttggtattgttgttgttgtttacttggtgtgactgatgctcttttaaacatgaatctgtgttgcagGCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGCATAGGGCCCTCAAGCTGCCAACTTTGCCCAAACCCCTGCTGGGAGTAAT
species | Zea mays |
transcript | GRMZM2G702159_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTT GCTTTATGATTCTCATGTACATATTTGAGACGTACCTTCACACCCGTCAGCEST: gi|40286924|gb|CK327316.1|CK327316
genomic: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTTgtaagtcccc ... tgtgttgcagGCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGC
EST: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTT GCTTTATGATTCTCATGTACATATTTGAGACGTACCTTGACACCCGTCAGCEST: gi|91875692|gb|EB405649.1|EB405649
genomic: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTTgtaagtcccc ... tgtgttgcagGCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGC
EST: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTT GCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGCEST: gi|211231533|gb|FL255917.1|FL255917
genomic: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTTgtaagtcccc ... tgtgttgcagGCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGC
EST: GCCTCCGCCCTTGGCTCCAAT-GCGCTGTCCTACCTGGAGGCCGTGCTTT GCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGCEST: gi|34391316|gb|CF384544.1|CF384544
genomic: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTTgtaagtcccc ... tgtgttgcagGCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGC
EST: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTT GCTTTATGATTCTCATGTACATATTTGAGACGTACCTTCACACCCGTCAGCEST: gi|211077181|gb|FL069427.1|FL069427
genomic: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTTgtaagtcccc ... tgtgttgcagGCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGC
EST: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTT GCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGCEST: gi|211074451|gb|FL069426.1|FL069426
genomic: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTTgtaagtcccc ... tgtgttgcagGCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGC
EST: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTT GCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGCEST: gi|101394395|gb|EB819132.1|EB819132
genomic: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTTgtaagtcccc ... tgtgttgcagGCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGC
EST: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTT GCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGC
genomic: GCCTCCGCCCTTGGCTCCAATGGCGCTGTCCTACCTGGAGGCCGTGCTTTgtaagtcccc ... tgtgttgcagGCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGC
gttgttgtttacttggtgtgactgatgctcttttaaacatgaatctgtgttgcagGCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGCATAGGGCCCTCAAGCTGCCAACTTTGCCCAAACCCCTGCTGGGAGTAAT
gactgat putative branch site (score: 6)
ttttaaacatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attacatgatatgcctaatgtcatcattatttacttggtattgttgttgttgtttacttggtgtgactgatgctcttttaaacatgaatctgtgttgcagGCTTTATGATTCTCATGTTCATATTTGAGACGTATCTTGACATCCGTCAGCATAGGGCCCTCAAGCTGCCAACTTTGCCCAAACCCCTGCTGGGAGTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
-ttacatg
- - - - -tatgcct
- - - - - - - - - - - - - - - ttacttg
- - - - - - - - - - - - - - - - - - - - ttgttgt
- - - - - - - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgaa