Sequence
atgc intronic sequence ATGC exonic sequencetaaataaacgtttgttttctttattgttgcatatatacatttccttcttattcctttgagatatcaatcacttctattatgatttaaggtcagaaaacattactgcttgtttttcactttttcttgaaaaatgcaagaatgtttgcaagagtatgtaatttgaaacgttacttacacaaAAATCAGGAAGACCATGCAAAGATGGGGGTGATGATCCGCCACTATGACAAGAAGGAACTGAAAGGGTATATTCGTATATTAGTTGGGAAACCCGAGCAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G701696_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g47940.1 (Oryza sativa), 3'ss of exon 8
taaataaacgtttgttttctttattgttgcatatatacatttccttcttattcctttgagatatcaatcacttctattatgatttaaggtcagaaaacattactgcttgtttttcactttttcttgaaaaatgcaagaatgtttgcaagagtatgtaatttgaaacgttacttacacaaAAATCAGGAAGACCATGCAAAGATGGGGGTGATGATCCGCCACTATGACAAGAAGGAACTGAAAGGGTATATTCGTATATTAGTTGGGAAACCCGAGCAC-------
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---------------------------------------------------------------------------attactattcatactttgaaagga--aatgctgatgatttagtttc-----aacaatataa---tgcctgcagcatcattcacataattttgtt-caaaaacaattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAACTAAAGGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATG
upper sequence: GRMZM2G701696_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G27220.1 (Glycine max), 3'ss of exon 9
taaataaacgtttgttttctttattgttgcatatatacatttccttcttattcctttgagatatcaatcacttctattatgatttaaggtcagaaaacattactgcttgtttttcactttt--tcttgaaaaatgcaagaatgtttgcaagagtatgtaatttgaaacgttacttacacaaAAAT-CAGGAAGACCATGCAAAGATGGGGGTGATGATCCGCCACTATGACAAGAAGGAACTGAAAGGGTATATTCGTATATTAGTTGGGAAACCCGAGCAC-------
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--------------------------------------------------------------------------------------agatct-attgcaagattgtttcatttgaaattttggcatttaggaatgcagt--taaccaaatttgtcgccaacttgagacattatctctttatgttcacagGAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAGCTGAAAGGGTACGTTCGTGTGACTGTTGGGAAGCCTGAACAAACAGATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaaaaatgcaagaatgtttgcaagagtatgtaatttgaaacgttacttacacaaAAATCAGGAAGACCATGCAAAGATGGGGGTGATGATCCGCCACTATGACAAGAAGGAACTGAAAGGGTATATTCGTATATTAGTTGGGAAACCCGAGCAC
tacttac putative branch site (score: 1)
tatgtaatttgaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaataaacgtttgttttctttattgttgcatatatacatttccttcttattcctttgagatatcaatcacttctattatgatttaaggtcagaaaacattactgcttgtttttcactttttcttgaaaaatgcaagaatgtttgcaagagtatgtaatttgaaacgttacttacacaaAAATCAGGAAGACCATGCAAAGATGGGGGTGATGATCCGCCACTATGACAAGAAGGAACTGAAAGGGTATATTCGTATATTAGTTGGGAAACCCGAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA