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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gaaaccgcaggcggaggagagctacgggtccggcgggtacggctctggctacggcggtcagacccggccggaggagagctatgggtcagcagggtatggatctgccaatccgcaggctgagacatacggctctggctacgggaggaagccacaggtagaggagagctacggatcggagtatgggtctgggttcgggagGAAGCCGCAGATTGAGGAGAGCTATGGATCGGGGTACGGGAGGACGCCGCAGGTTGAGGAGAGCTATGGATCTGGTTACGGGAGGAAGCCTCAGGTTGAG

Basic information

species Zea mays
transcript GRMZM2G701082_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211080386|gb|FL084291.1|FL084291
EST:     TATGGGAGGAAGAAGCAGGAGGAGGAGAGCTACGGCTCTGGATATGGGAG                         GAAACCGCAGGCGGAGGAGAGCTA
genomic: TATGGGAGGAAGAAGCAGGAGGAGGAGAGCTACGGCTCTGGATATGGGAGgaaaccgcag ... ggttcgggagGAAGCCGCAGATTGAGGAGAGCTA
EST: gi|211080379|gb|FL084284.1|FL084284
EST:     TATGGGAGGAAGAAGCAGGAGGAGGAGAGCTACGGCTCTGGATATGGGAG                         GAAACCGCAGGCGGAGGAGAGCTA
genomic: TATGGGAGGAAGAAGCAGGAGGAGGAGAGCTACGGCTCTGGATATGGGAGgaaaccgcag ... ggttcgggagGAAGCCGCAGATTGAGGAGAGCTA
EST: gi|211080378|gb|FL084283.1|FL084283
EST:     TATGGGAGGAAGAAGCAAGAGGAGGAGAGCTACGGCTCTGGATATGGGAG                         GAAACCGCAGGCGGAGGAGAGCTA
genomic: TATGGGAGGAAGAAGCAGGAGGAGGAGAGCTACGGCTCTGGATATGGGAGgaaaccgcag ... ggttcgggagGAAGCCGCAGATTGAGGAGAGCTA
EST: gi|211080388|gb|FL084293.1|FL084293
EST:     TATGGGAGGAAGAAGCAGGAGGAGGAGAGCTACGGCTCTGGATATGGGAG                         GAAACCGCAGGCGGAGGAGAGCTA
genomic: TATGGGAGGAAGAAGCAGGAGGAGGAGAGCTACGGCTCTGGATATGGGAGgaaaccgcag ... ggttcgggagGAAGCCGCAGATTGAGGAGAGCTA
EST: gi|211077653|gb|FL084280.1|FL084280
EST:     TATGGGAGGAAGAAGCAGGAGGAGGAGAGCTACGGCTCTGGATATGGGAG                         GAAACCGCAGGCGGAGGAGAGCTA
genomic: TATGGGAGGAAGAAGCAGGAGGAGGAGAGCTACGGCTCTGGATATGGGAGgaaaccgcag ... ggttcgggagGAAGCCGCAGATTGAGGAGAGCTA
EST: gi|149096523|gb|EE182270.2|EE182270
EST:     TATGGGAGGAAGAAGCAGGAGGAGGAGAGCTACGGCTCTGGATATGGGAG                         GAAGCCGCAGATTGAGGAGAGCTATGGATCGGGGTACGGGAGGACGCCGCA
genomic: TATGGGAGGAAGAAGCAGGAGGAGGAGAGCTACGGCTCTGGATATGGGAGgaaaccgcag ... ggttcgggagGAAGCCGCAGATTGAGGAGAGCTATGGATCGGGGTACGGGAGGACGCCGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaaaccgcaggcggaggagagctacgggtccggcgggtacggctctggctacggcggtcagacccggccggaggagagctatgggtcagcagggtatggatctgccaatccgcaggctgagacatacggctctggctacgggaggaagccacaggtagaggagagctacggatcggagtatgggtctgggttcgggagGAAGCCGCAGATTGAGGAGAGCTATGGATCGGGGTACGGGAGGACGCCGCAGGTTGAGGAGAGCTATGGATCTGGTTACGGGAGGAAGCCTCAGGTTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA