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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgatttgtagaacttttgattgtcttcatttgctaagtagccatgtagacactaggtgacaactgacaagcatatgcttggtgcagCTACCGCACACCGAGGATCACCACATGCTTCAGAACCATGCACCTCCAAAATACAGATCCTTTTCTG

Basic information

species Zea mays
transcript GRMZM2G588223_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31359957|gb|CD444314.1|CD444314
EST:     GATAGATTTGGCTATCAGAACCAGAGGTTTCCCTCTCAG                         CTACCGCACACCGAGGATCACCACATGCTTCAGAACCATGCACCTCCAAAA
genomic: GATAGATTTGGCTATCAGAACCAGAGGTTTCCCTCTCAGgtacgtgatt ... cttggtgcagCTACCGCACACCGAGGATCACCACATGCTTCAGAACCATGCACCTCCAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaagtagccatgtagacactaggtgacaactgacaagcatatgcttggtgcagCTACCGCACACCGAGGATCACCACATGCTTCAGAACCATGCACCTCCAAAATACAGATCCTTTTCTG
                             aactgac  putative branch site (score: 2)