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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacagccgcagcgccctgtgtcgagatctcccttgtacccccccttccctctagcgttttcctgatttgagtgacaagattctaagaagctgttgttttatgtgttacccaatattctaacctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGCCGCCGTTGTACGAGCCTACCCGAGAGGGTCCTGCCCACGCGCCCCTCTT

Basic information

species Zea mays
transcript GRMZM2G582965_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149083655|gb|EE173001.2|EE173001
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|71448304|gb|DR829354.1|DR829354
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|87156889|gb|DY401678.1|DY401678
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGGCTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|71432870|gb|DR813920.1|DR813920
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|211014285|gb|FL398134.1|FL398134
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|91052064|gb|EB162482.1|EB162482
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|71764485|gb|DR962422.1|DR962422
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|211360525|gb|FL385278.1|FL385278
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|211025578|gb|FL428632.1|FL428632
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|71443962|gb|DR825012.1|DR825012
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|71769204|gb|DR967141.1|DR967141
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|22819505|gb|BU499595.1|BU499595
EST:     CGGCTCCCTCGGCATCCACCAGCGGTGCCCGGCTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|211392358|gb|FL376953.1|FL376953
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|74235041|gb|DT642955.1|DT642955
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|211394812|gb|FL369336.1|FL369336
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|74243351|gb|DT651265.1|DT651265
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|211148660|gb|FL386503.1|FL386503
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|211063866|gb|FL423545.1|FL423545
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|71326865|gb|DR800092.1|DR800092
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|78111642|gb|DV530039.1|DV530039
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|148956440|gb|EC902264.2|EC902264
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|50327425|gb|CO522551.1|CO522551
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|211079022|gb|FL378006.1|FL378006
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|93014999|gb|EB640519.1|EB640519
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|148943822|gb|EC888898.2|EC888898
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|50322394|gb|CO517520.1|CO517520
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|71327559|gb|DR800388.1|DR800388
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|78117381|gb|DV535768.1|DV535768
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|149104878|gb|EE290343.2|EE290343
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|149069625|gb|EE158010.2|EE158010
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
EST: gi|71432955|gb|DR814005.1|DR814005
EST:     CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAG                         AAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC
genomic: CCGACGGTGCCCGGCTCCCTCGGCATCCACCAGCGGTGCCCGACTCCAAGgtatacagcc ... cctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagattctaagaagctgttgttttatgtgttacccaatattctaacctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGCCGCCGTTGTACGAGCCTACCCGAGAGGGTCCTGCCCACGCGCCCCTCTT
                                       ttctaac  putative branch site (score: 1)
                                             cctctcgc  CT-rich tract
                                   aatattctaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatacagccgcagcgccctgtgtcgagatctcccttgtacccccccttccctctagcgttttcctgatttgagtgacaagattctaagaagctgttgttttatgtgttacccaatattctaacctctcgcagAAATGTACAAGTCACGGCTGCAGGAGCTGTGCCAGAAGCGGCGATGGGCGCCGCCGTTGTACGAGCCTACCCGAGAGGGTCCTGCCCACGCGCCCCTCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG