1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcctcctcctccgtttctcgcttccagatttttgctctcttggtattttttgggtttctggaggcgcaaattgttttctttccggtggttgattgctgcgggttcaattgcgcagGAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTCGCCATCCTCAAG
species | Zea mays |
transcript | GRMZM2G578572_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTG GAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTCEST: gi|211214550|gb|FL384291.1|FL384291
genomic: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTGgtaagcctcc ... aattgcgcagGAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTC
EST: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTG GAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTCEST: gi|211198908|gb|FL376287.1|FL376287
genomic: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTGgtaagcctcc ... aattgcgcagGAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTC
EST: NGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTG GAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTCEST: gi|22489451|gb|BU049374.1|BU049374
genomic: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTGgtaagcctcc ... aattgcgcagGAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTC
EST: GCTTCGAGCTG GAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTCEST: gi|211423506|gb|FL387502.1|FL387502
genomic: GCTTCGAGCTGgtaagcctcc ... aattgcgcagGAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTC
EST: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTG GAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCCTATGTEST: gi|87152388|gb|DY397177.1|DY397177
genomic: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTGgtaagcctcc ... aattgcgcagGAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCC-TATGT
EST: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTG GAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTCEST: gi|211389853|gb|FL384028.1|FL384028
genomic: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTGgtaagcctcc ... aattgcgcagGAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTC
EST: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTG GAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTCEST: gi|74242363|gb|DT650277.1|DT650277
genomic: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTGgtaagcctcc ... aattgcgcagGAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTC
EST: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTG GAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTCEST: gi|211487814|gb|FL394401.1|FL394401
genomic: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTGgtaagcctcc ... aattgcgcagGAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTC
EST: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTG GAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTCEST: gi|211168239|gb|FL423106.1|FL423106
genomic: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTGgtaagcctcc ... aattgcgcagGAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTC
EST: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTG GAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTC
genomic: AGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTGgtaagcctcc ... aattgcgcagGAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTC
gaggcgcaaattgttttctttccggtggttgattgctgcgggttcaattgcgcagGAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTCGCCATCCTCAAG
ggttgat putative branch site (score: 60)
aaattgttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcctcctcctccgtttctcgcttccagatttttgctctcttggtattttttgggtttctggaggcgcaaattgttttctttccggtggttgattgctgcgggttcaattgcgcagGAGGACCCCGTGCTTCTCACGCCTGAGGACAGCAATCAGAAGCCCTATGTCGCCATCCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC