Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattagcagttcatgtttaatttattactactcaagcaaaaaaaatgatgtctgactttgctattgcaaatgattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC

Basic information

species Zea mays
transcript GRMZM2G568636_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G568636_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g36500.1 (Oryza sativa), 3'ss of exon 1
-------gtaattagca---gttcatgtttaattta----ttactactcaagcaaaaaaaatgatgtctgactttgctattgcaaatgattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC
        || ||| ||   || ||||  |||   |    ||||   ||  || || |      | |      | | |    |||||| |  | |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||| ||||||||||||||||||||||||||| |||| ||
gtaacgtatatttaccatgcgtgcatgcgtaaaacacattttaccgttcttgcgaatatgtatgtatactgactcgatcgaacaaatgctc-atcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACGTGAACTCGGTGATCACGGCGCCCGGGCACGACGAGATCCTGCCCATCAACGGCATCAC

upper sequence: GRMZM2G568636_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g36480.1 (Oryza sativa), 3'ss of exon 1
------------gtaattagcagttcatgtttaa----tttattactactcaagcaaaaa-----------aaatgatgtctgactttgctattgcaaatgattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC
              | | |    | ||||| |||      | ||||   ||| || || |           |  |||  |||||||         |||||| |  | ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||
gtaacgtatttaccattcattcatgcatgtgtaaaacacattttaccgttcatgcgaatatgtatgtactgagttgagttctgactcgatcga-acaaatgctc-atcagCGTGGTGGTACAAGCCAGAGTACATCATCAACGAGCTGAACGTGAACTCGGTGATCACGACGCCCGGGCACGACGAGATCCTGCCCATCAACGGCATCAC

upper sequence: GRMZM2G568636_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA14G33490.1 (Glycine max), 3'ss of exon 1
--------------gtaattagcagt-tcatgtttaatttattacta----ctcaagcaaaaaaaatgatgtctgactttgctattgcaaatgattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC
              ||| |  |   | | |  | |   ||  ||| |     ||| | | | ||| |    |   | | |  | | |    ||     ||||  ||||||||||||| |||||| |  ||||||||| |||  |||||||| |||||||| |||||    ||||| |||||| || ||||||||     |||
ccaactttgcatgtgtagtctgtcatatgacatgtttcttcctacgaaattttcatggacacaaactataattacattctattttggtg--tgtccctgcagGTTGGTGGTACAAGCAGGAGTATAAGATCAACGAGTTGAGTATAAACTCAGTGATAACTACGCCTTCTCACGAGGAGATCTTGTCCATCAACTCATATAC

upper sequence: GRMZM2G568636_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA13G02510.1 (Glycine max), 3'ss of exon 1
----------------------------------------------------------------------------------gtaattagcagttcatgtttaatttattactactcaag-caaaaaaaatgatgtctgactttgctattgcaaatgattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC
                                                                                   | |  ||  || | | |  | |    |     | |   ||   | |   ||   |||| ||  | |||    |      | ||  |||||||||||||| || ||||||||||||||| |||| |||||||| |||||||| |||||  | ||||| |||||| |||||||||||      ||
gtataatatgtctttcttcgaactcttatggtttttaattttgttacttctttttgcctaggaatattgcatgaggttgaaaatgaacagtggtacttttacagtgagatttagataatttcatggacagaaattaatgacgttttttttg-gtgtctccttgtagGTTGGTGGTACAAGCCAGAATACATCATCAACGAGTTGAATATAAACTCAGTGATAACTACGCCTTGTCACGAGGAGATCTTGCCCATCAACTCATGGAC

upper sequence: GRMZM2G568636_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA14G33480.1 (Glycine max), 3'ss of exon 1
------------gtaattagcagtt--catgtttaatttatt-actactcaagcaaaaaaaatgatgtctgactttgctattgcaaatgattga--gcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC
            ||   || ||  |  |||||||  |  |   | |  |        | |||| |  |     |||| ||||     ||  |    ||||  |||||||| |||||||| || |||||||||||| ||||||||||||| ||||||||||||||| | ||| | |||||| |||||||||||      ||
caacttagagatgtgtgtaacatataacatgtttcttccaaggaattttttcatggcacaaattaattacatgtttgatattcttggtgtgtccctgcagGTTGGTGGTATAAGCCGGAATATATCATCAACGAGTTGAACATAAACTCAGTGATAACGACGCCGTGTCACCAGGAGATCTTGCCCATCAACTCATGGAC

upper sequence: GRMZM2G568636_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA06G11430.1 (Glycine max), 3'ss of exon 1
gtaattagcagttcatgttt---aatttattact-------actcaagcaaa----aaaaatgatgtc-tgactttgctattgcaaatgattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC
||| |   |  |||   |||   | ||| || ||       | || |  | |     |  || |  |  ||  ||  || || ||| |  ||    ||| ||||||||||||||||| || || ||||||||||| ||||||||||| |||||||| |||||  | ||||| |||||| |||||||||||      ||
gtattctactattcccttttcttatttttttgctctcataaattctaatagactttgattataaaataatgttttctctgtttcaatttttttt-tagCTTGGTGGTACAAGCCGGACTATATTATCAACGAGCTTAACATAAACTCCGTGATAACCACGCCTTGCCACGAGGAGATCTTGCCCATCAACTCATGGAC

upper sequence: GRMZM2G568636_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G37130.1 (Arabidopsis thaliana), 3'ss of exon 1
----------------------------------------------------------------------------------------gtaattagcagttcatgtttaatttattactactcaagcaaaaaaaatgatgtctgactttgcta-ttgca-------------aatgattgagc---agCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC
                                                                                          ||  || | | ||| || ||   || |  |   ||         |||||||| |  | ||  | || ||             |||| ||  |    ||  |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||||  | ||||| ||||| || |||||||||    | ||
gtacataaaatctttttgcttcaataaatctcattaagatgaactaattgatatgtttaaaaagtctccgaacctataggagaaaaacaaaaacagaaat-catattaaaaa-atgaaaaactaatgttggtggatgatgtcagcttctgtgacttacataaattcaaattcaatggttttgttttagGTTGGTGGTATAAGCCAGAGTACATAATCAACGAGCTAAACATAAACTCCGTGATTACGACGCCATGTCACGAGGAGATTCTTCCCATCAACGCTTTCAC

upper sequence: GRMZM2G568636_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G77760.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaa-ttagcagttcatgtttaatttattactactcaagcaaaaaaaatgatgtctgactttgctattgcaaatgattga-gcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC
||||  ||  |  | |   ||   || ||  |||   |    |   |  |||| || |  ||    || |   |  |||   |||| |||||||| ||||| || ||||| ||||||||||| || |||||||||||||| || || || || ||||  |||||  | || || ||     | ||
gtaaactattaacttacccttgtcttctt-ttac---attttagttaccgatg-ctaatattat--ttacttgtttttgttacagCTTGGTGGTATAAGCCTGAATACATAATCAACGAGCTTAATATAAACTCGGTGATTACAACACCTGGTCACGCAGAGATTTTACCGATTAATGCATTCAC

upper sequence: GRMZM2G568636_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv18s0001g03910.t01 (Vitis vinifera), 3'ss of exon 1
--------------------------------------gtaattagcagttcatgtttaatttattactactcaa----gcaaaaaaaatgatgtc---tgactttgctattgcaaatga--ttgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC
                                        |  |  |  |  || |||  ||| |   |    ||    || || |  | ||| |    | |  || |||||     |||  | ||||||| |||||||| ||||||||||||||||| || ||||||||||| ||||| || || || || ||  | ||||| || ||| | |||||||||  |   ||
gtacactgcgccccacatccccccacccccctattaatagacatgactctctatattttgtttttggttttataaatgggcgaagatgaggatctgaggtaatgttactattttggttgacatggagcagCTTGGTGGTATAAGCCGGAGTACATCATTAATGAGCTGAACATTAACTCCGTCATCACTACACCATGCCACGAAGAAATCTTACCCATCAACTCCTGGAC

upper sequence: GRMZM2G568636_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDP00805 (Chlamydomonas reinhardtii), 3'ss of exon 5
-------------------------------------------------------------------------------------------gtaattagcagttcatgtttaatttattactactcaagcaaaaaaaatgatgtc-tgactttgctattgcaaatgattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC
                                                                                           | |  |  | |      ||  |     |   |  |  |     ||      ||| |||   |     || | | |   | ||||  |||||||||||||| |||| |||||||||||| || ||||| |||   | |||  |   |||  ||||||||||| |  | ||  |  ||  ||    
gtgagcgcgggggggaggaccgtggcgtgtgtgtattggagagcacagggtaggaaacagggaaagatttccgcagaaatcttgtgtgtgtgcatgtgaccgccatcattcgaacccgtgtcatccccgttccgaagtccccgtcctgaaactcgccgtgtacacg--cgcgcagGCTGGTGGTACAAGCCCGAGTTCATCATCAACGACCTCAACATCAACAGCGCGATGGCTCGGCCCTGGCACGACGAGCTGGTCCCGCTGGACGCCAACCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148995688|gb|EE034909.2|EE034909
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149079145|gb|EE168076.2|EE168076
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|74235874|gb|DT643788.1|DT643788
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149008612|gb|EE040794.2|EE040794
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149069798|gb|EE158184.2|EE158184
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148967997|gb|EE019320.2|EE019320
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|88747519|gb|DY531660.1|DY531660
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149102923|gb|EE288274.2|EE288274
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149101371|gb|EE187488.2|EE187488
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149102688|gb|EE288038.2|EE288038
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149013832|gb|EE043309.2|EE043309
EST:     GCCGAGCTGGCCAACGCAGAAG                         GGGGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: GCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|91876838|gb|EB406795.1|EB406795
EST:     CAACGCAGAAG                         CGTGGTGGTACAAACCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149113199|gb|EE182093.2|EE182093
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|101396856|gb|EB820354.1|EB820354
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149006649|gb|EE040176.2|EE040176
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|76286149|gb|DV025717.1|DV025717
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148945530|gb|EC890778.2|EC890778
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|94474682|gb|EB703640.1|EB703640
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|71772127|gb|DR970064.1|DR970064
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148929576|gb|EC875902.2|EC875902
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149015338|gb|EE045160.2|EE045160
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148933584|gb|EC877455.2|EC877455
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|71320193|gb|DR796850.1|DR796850
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148957498|gb|EC903579.2|EC903579
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGTTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149071519|gb|EE159911.2|EE159911
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148970871|gb|EE021657.2|EE021657
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149026914|gb|EE046266.2|EE046266
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|50327341|gb|CO522467.1|CO522467
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|76281939|gb|DV021507.1|DV021507
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149001478|gb|EE038779.2|EE038779
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149083126|gb|EE172388.2|EE172388
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149084449|gb|EE173907.2|EE173907
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148939489|gb|EC884068.2|EC884068
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|76016823|gb|DT943993.1|DT943993
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148987150|gb|EE030978.2|EE030978
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149003165|gb|EE038903.2|EE038903
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|71323274|gb|DR798292.1|DR798292
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148935196|gb|EC879231.2|EC879231
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148939973|gb|EC884703.2|EC884703
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|76010445|gb|DT937615.1|DT937615
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148951960|gb|EC897739.2|EC897739
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148969954|gb|EE020866.2|EE020866
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148964100|gb|EE015257.2|EE015257
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148944335|gb|EC889434.2|EC889434
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148966103|gb|EE017045.2|EE017045
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149049728|gb|EE048410.2|EE048410
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|71331316|gb|DR802493.1|DR802493
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|71757612|gb|DR955549.1|DR955549
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|71426257|gb|DR807307.1|DR807307
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|149070535|gb|EE158938.2|EE158938
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|50324280|gb|CO519406.1|CO519406
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148974727|gb|EE025538.2|EE025538
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
EST: gi|148941837|gb|EC886810.2|EC886810
EST:     CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAG                         CGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG
genomic: CAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 47 (upstream exon), 44 (downstream exon)
Score: 5

CGCATCATCGTCACCCCCGCCGAGTCCGACAATTACTACCATTTCAAGGACAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagca ... gattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actactcaagcaaaaaaaatgatgtctgactttgctattgcaaatgattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC
                       gtctgac  putative branch site (score: 5)
           aaaaaaaatgatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattagcagttcatgtttaatttattactactcaagcaaaaaaaatgatgtctgactttgctattgcaaatgattgagcagCGTGGTGGTACAAGCCGGAGTACATCATCAACGAGCTGAACATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC