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gtgagctcttaacgatccgtttgtggtttccacacttaagtttagcttatgaaattaatatgccatcatgaaattgaaccgccgactataagtagtttttgctgtaccaactattgcttgtttgcttcataattctgattctcactcagaaccattgtttggggccatgcccttcagGGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAACCCCAATGGATATTGCTAAGGAGATATCAAGTGGATTTGCAGCTAGTTGT
species | Zea mays |
transcript | GRMZM2G553314_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAA GGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAACEST: gi|149089740|gb|EE179011.2|EE179011
genomic: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAAgtgagctctt ... tgcccttcagGGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAAC
EST: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAA GGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAACEST: gi|13237202|gb|BG355216.1|BG355216
genomic: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAAgtgagctctt ... tgcccttcagGGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAAC
EST: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAA GGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAACEST: gi|211033167|gb|FL324568.1|FL324568
genomic: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAAgtgagctctt ... tgcccttcagGGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAAC
EST: AAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAA GGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAACEST: gi|50334018|gb|CO529144.1|CO529144
genomic: AAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAAgtgagctctt ... tgcccttcagGGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAAC
EST: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAA GGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAACEST: gi|211455406|gb|FL343586.1|FL343586
genomic: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAAgtgagctctt ... tgcccttcagGGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAAC
EST: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAA GGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAACEST: gi|211514340|gb|FL308803.1|FL308803
genomic: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAAgtgagctctt ... tgcccttcagGGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAAC
EST: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAA GGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAACEST: gi|78092217|gb|DV520591.1|DV520591
genomic: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAAgtgagctctt ... tgcccttcagGGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAAC
EST: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAA GGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAAC
genomic: CAGGCAAGGCAAGCCGTCGAGCGGCTGAATATCGGCGGCGAAGTTATCAAgtgagctctt ... tgcccttcagGGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAAC
tgcttcataattctgattctcactcagaaccattgtttggggccatgcccttcagGGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAACCCCAATGGATATTGCTAAGGAGATATCAAGTGGATTTGCAGCTAGTTGT
ttctcac putative branch site (score: 71)
tgcccttc putative PPT
ataattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctcttaacgatccgtttgtggtttccacacttaagtttagcttatgaaattaatatgccatcatgaaattgaaccgccgactataagtagtttttgctgtaccaactattgcttgtttgcttcataattctgattctcactcagaaccattgtttggggccatgcccttcagGGTAACTTTGCCTGATGGCGCTATCAAGGAGGGTAAGAAATGGATAACAACCCCAATGGATATTGCTAAGGAGATATCAAGTGGATTTGCAGCTAGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT