Sequence
atgc intronic sequence ATGC exonic sequence...atactcaaaagaacataggtgagttcttacaaactctaactaatgaaaagctgacattttccaaagataaatactacatctgcaagagtacctttttcagGTTGCTGAAAATTTAATTCTCGAGAAAACATCATGTCCTTTGGGTGTCCTATTGGTTATTTTTGAGTCCAGGCCTGATGCCTTGGTCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G552586_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g38150.2 (Oryza sativa), 3'ss of exon 8
-----------------------atactcaaaagaacataggtgagttcttacaaactctaactaatgaaaagctgacattttccaaagataaatactacatctgcaagagtaccttttt--cagGTTGCTGAAAATTTAATTCTCGAGAAAACATCATGTCCTTTGGGTGTCCTATTGGTTATTTTTGAGTCCAGGCCTGATGCCTTGGTCCAG
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gtgaatgccagcctttttaatagaaactctttttaatagaaatctgctatgagatttcacagaaattctagattctagatgatatatccatagtgattttaacaaaaagatttcccctttgccagGTTGCTGATGATTTAGTTCTTGAGAAAACATCTTGCCCATTAGGTGTTCTCTTAATTGTTTTTGAGTCCCGACCTGATGCCTTGGTTCAG
upper sequence: GRMZM2G552586_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA07G16510.1 (Glycine max), 3'ss of exon 6
atactcaaaagaacataggtgagttcttacaaactctaactaatgaaaagctgacattttccaaagataaatactacatctgcaagagtaccttttt-----cagGTTGCTGAAAATTTAATTCTCGAGAAAACATCATGTCCTTTGGGTGTCCTATTGGTTATTTTTGAGTCCAGGCCTGATGCCTTGGTCCAG
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----gcagttattcaataacaaattct-agaaaatgttattaaaacatgcatcctattgctcaacactcattttggcaattctgattactgctctttgtgtccagCTAGCAGATAAACTCATCCTGGAGAAAATATCATGTCCTTTGGGTGTCCTCCTGGTTATATTCGAGTCTCGACCAGATGCCCTTGTTCAG
upper sequence: GRMZM2G552586_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA01G24530.1 (Glycine max), 3'ss of exon 10
-------atactcaaaagaacataggtgagttcttacaaactctaactaatgaaaagctgacattttccaaagataaatactacatctgcaagagtacctttttcagGTTGCTGAAAATTTAATTCTCGAGAAAACATCATGTCCTTTGGGTGTCCTATTGGTTATTTTTGAGTCCAGGCCTGATGCCTTGGTCCAG
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agtcactgcttttaccaaaaaatgaataa--tgttattaaactatacattttattgctcaacactctttg----tgacggttctgattgtttttct-ctttgtccagCTAGTAGATAAACTCATCCTGGAGAAGATATCATGTCCTTTGGGTGTCCTTCTGGTTATATTTGAGTCTCGACCTGATGCCCTTGTTCAG
upper sequence: GRMZM2G552586_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA03G12240.1 (Glycine max), 3'ss of exon 9
atactcaaaagaacataggtgagttcttacaaactctaactaatgaaaagctgacattttccaaagataaatactacatctgcaagagta-----cctttttcagGTTGCTGAAAATTTAATTCTCGAGAAAACATCATGTCCTTTGGGTGTCCTATTGGTTATTTTTGAGTCCAGGCCTGATGCCTTGGTCCAG
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-----tgtcactgctttgaccaaaaaatgaataatgttattaaactatacgttctattgttcaacactctttgtgacagttctgattgttgttctctttgttcagCTAGTAGATAAACTCATCCTGGAGAAGACATCATGTCCTTTGGGTGTCCTTCTGGTTATATTTGAGTCTCGACCTGATGCCCTTGTTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaagctgacattttccaaagataaatactacatctgcaagagtacctttttcagGTTGCTGAAAATTTAATTCTCGAGAAAACATCATGTCCTTTGGGTGTCCTATTGGTTATTTTTGAGTCCAGGCCTGATGCCTTGGTCCAG
agctgac putative branch site (score: 3)
tacctttttc putative PPT
aaagataaatacta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atactcaaaagaacataggtgagttcttacaaactctaactaatgaaaagctgacattttccaaagataaatactacatctgcaagagtacctttttcagGTTGCTGAAAATTTAATTCTCGAGAAAACATCATGTCCTTTGGGTGTCCTATTGGTTATTTTTGAGTCCAGGCCTGATGCCTTGGTCCAG
- - - aaaagaa
- - - - - - - - - - - - - - - - - - - - -aatgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catctgc