Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggcaatctgatctccctcccactccgctctctgcttccgcaaaccctaggtcgcgcgggagtctgacggatgtgtgatttcgtgtggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCATCGCGCTG

Basic information

species Zea mays
transcript GRMZM2G520535_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G520535_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os10g27340.2 (Oryza sativa), 3'ss of exon 1
-------------gtggcaatctgatctccctcccactccgctctctg------cttccgcaaaccctaggtcgcgcgggagtctgacggatgtgtgatttcgtgtggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCATCGCGCTG
              || | |   |||||| ||| | |||  | |  ||      |  |||| ||     | ||| |||  |  |||||      |    |||||        ||||||||||||||||||||| |||||| |||| ||||||||||| ||||| ||| |||||
gtgagtgtgacgactgacgagacgatctctctctctctctcccccatggccatcccgccgcgaattagggttcgtgcgatatcctgacc----cgccgcttcgttc------tagGGCGTTCCTGCACAAGGGGTTCCTGACGGACGCGGAGTGCGAGCACCTGATCTCGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74236044|gb|DT643958.1|DT643958
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|7844160|gb|AW787382.1|AW787382
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAA                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCA
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCA
EST: gi|31360260|gb|CD444617.1|CD444617
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211451195|gb|FL002405.1|FL002405
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211449078|gb|FL002398.1|FL002398
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|37424402|gb|CF649933.1|CF649933
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         AGCGTTCCTGCACAAGGGTTTTCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211449073|gb|FL002393.1|FL002393
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|7958433|gb|AW862735.1|AW862735
EST:     TCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: TCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211449076|gb|FL002396.1|FL002396
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211446954|gb|FL002385.1|FL002385
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211451194|gb|FL002404.1|FL002404
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211449074|gb|FL002394.1|FL002394
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTMGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|149014492|gb|EE044118.2|EE044118
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211446952|gb|FL002383.1|FL002383
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGSGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211446953|gb|FL002384.1|FL002384
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|71320428|gb|DR796958.1|DR796958
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211446956|gb|FL002387.1|FL002387
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211449082|gb|FL002402.1|FL002402
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211039976|gb|FL073407.1|FL073407
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|7844162|gb|AW787384.1|AW787384
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|148951226|gb|EC896920.2|EC896920
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211446955|gb|FL002386.1|FL002386
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|76019346|gb|DT946516.1|DT946516
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|32866419|gb|CF006101.1|CF006101
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211449068|gb|FL002388.1|FL002388
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|71328190|gb|DR800733.1|DR800733
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211449072|gb|FL002392.1|FL002392
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|71442480|gb|DR823530.1|DR823530
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|31353117|gb|CD437474.1|CD437474
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|78180250|gb|DV550623.1|DV550623
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211039973|gb|FL073404.1|FL073404
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211039977|gb|FL073408.1|FL073408
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGAGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211039972|gb|FL073403.1|FL073403
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGAATGCGGAGTGCGACCACCTCA
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGA-TGCGGAGTGCGACCACCTCA
EST: gi|89250537|gb|DY622323.1|DY622323
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|76287083|gb|DV026651.1|DV026651
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|211449075|gb|FL002395.1|FL002395
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
EST: gi|74236045|gb|DT643959.1|DT643959
EST:     GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAG                         GGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 111

CGGTGTTCGCGCTCCTCCTCGCTGTCTGCGCTTCTGCGGCGAGCAGGGGCGCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCATCGCGCTG


Block sizes: 45 (upstream exon), 46 (downstream exon)
Score: 42

CGGTGTTCGCGCTCCTCCTCGCTGTCTGCGCTTCTGCGGCGAGCAGGGGCGCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCATCGCGCTG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 54

CGGTGTTCGCGCTCCTCCTCGCTGTCTGCGCTTCTGCGGCGAGCAGGGGCGCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCATCGCGCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 68

CGGTGTTCGCGCTCCTCCTCGCTGTCTGCGCTTCTGCGGCGAGCAGGGGCGCTGGTTCCTTCGACCCATCCCGAGTGGTCCAACTCTCGTGGCGCCCCAGgtggcaatct ... tggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCATCGCGCTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaccctaggtcgcgcgggagtctgacggatgtgtgatttcgtgtggctattagGGCGTTCCTGCACAAGGGTTTCCTGTCGGATGCGGAGTGCGACCACCTCATCGCGCTG
                     gtctgac  putative branch site (score: 68)
                                                 tatta  TA-rich tract