1 5' 3' | 2 5' 3' | 3 5' 3' |
...acattgcaaccataagttgtgttcttttttttcaaatcaacaaggcatcaatgagattcatgaactgattgtgccactattgcatttcttcggcacatatGATTGGTGTATGGGCAATGTGCCTCTGGGAGCAAATGGGAAAGCCAGCGAAGGTGAATTTGATCGAGCTTGGCCTAGGACGAGGAACACCCTTGGCTGAT
species | Zea mays |
transcript | GRMZM2G498418_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
catcaatgagattcatgaactgattgtgccactattgcatttcttcggcacatatGATTGGTGTATGGGCAATGTGCCTCTGGGAGCAAATGGGAAAGCCAGCGAAGGTGAATTTGATCGAGCTTGGCCTAGGACGAGGAACACCCTTGGCTGAT
aactgat putative branch site (score: 3)
catttcttc putative PPT
atttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acattgcaaccataagttgtgttcttttttttcaaatcaacaaggcatcaatgagattcatgaactgattgtgccactattgcatttcttcggcacatatGATTGGTGTATGGGCAATGTGCCTCTGGGAGCAAATGGGAAAGCCAGCGAAGGTGAATTTGATCGAGCTTGGCCTAGGACGAGGAACACCCTTGGCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-cattgca
- - - - - - - - ttgtgtt
- - - - - - - - - - - - - - - - - - -caacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - -attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccacta